NTDB

Overview

Name	clpC	Type	Regulator
Locus tag	VZG88_RS12670	Genome accession	NZ_CP143871
Coordinates	2511574..2514261 (-)	Length	895 a.a.
NCBI ID	WP_208678072.1	Uniprot ID	-
Organism	Synechococcus elongatus IITB6
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2506574..2519261

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZG88_RS12635 (VZG88_12635)	-	2506760..2507896 (+)	1137	WP_208678073.1	DUF3747 domain-containing protein	-
VZG88_RS12640 (VZG88_12640)	rplL	2508178..2508564 (-)	387	WP_011243206.1	50S ribosomal protein L7/L12	-
VZG88_RS12645 (VZG88_12645)	rplJ	2508624..2509151 (-)	528	WP_208674449.1	50S ribosomal protein L10	-
VZG88_RS12650 (VZG88_12650)	rplA	2509380..2510093 (-)	714	WP_208674448.1	50S ribosomal protein L1	-
VZG88_RS12655 (VZG88_12655)	rplK	2510165..2510590 (-)	426	WP_011377656.1	50S ribosomal protein L11	-
VZG88_RS12660 (VZG88_12660)	nusG	2510598..2511191 (-)	594	WP_222610299.1	transcription termination/antitermination protein NusG	-
VZG88_RS12665 (VZG88_12665)	secE	2511224..2511469 (-)	246	WP_208674443.1	preprotein translocase subunit SecE	-
VZG88_RS12670 (VZG88_12670)	clpC	2511574..2514261 (-)	2688	WP_208678072.1	ATP-dependent chaperone ClpB	Regulator
VZG88_RS12675 (VZG88_12675)	gloA	2514349..2514762 (-)	414	WP_208679210.1	lactoylglutathione lyase	-
VZG88_RS12680 (VZG88_12680)	eno	2514972..2516264 (+)	1293	WP_208678071.1	phosphopyruvate hydratase	-
VZG88_RS12685 (VZG88_12685)	-	2516507..2518273 (+)	1767	WP_208678070.1	ABC transporter ATP-binding protein	-

Sequence

Protein

Download Length: 895 a.a. Molecular weight: 100029.27 Da Isoelectric Point: 4.6259

                                >NTDB_id=844606 VZG88_RS12670 WP_208678072.1 2511574..2514261(-) (clpC) [Synechococcus elongatus IITB6]

MQPTDPNRFTDQAWDAIVESQTVARQLRQQQLEVEHVLLALLDQESGVAAEILAKAGVAVANLRQPLEDFARRQPRNATG

TQLYLGRGLDRLLDLAERARELWQDEFIGVEHLLMGFVEDDRIGRRLCQGFKLDAKTLETTIQELRSPAADEADAEESEP

SYPFLSKYGRDLTALAEQEKLDPVIGRDLEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEGLAQRIVAGEVPDSLKQRR

LISLDMGSLIAGAKYRGEFEERLRAVLHEVTHSDGQMVLFIDELHTVVGAGAGQQGSAMDAGNLLKPMLARGELRCIGAT

TTDEYRRTIEKDPALERRFQQVYVSQPSVEDTIAILRGLKERYEGHHGVKITDGSLIAAAKLSHRYISDRFLPDKAIDLI

DEASAQLKMEITSKPSELEDLERRLLQLEMEQLSLSGENGQATVHSDRLQQIQTELQTLQEQQARLNQQWQQEKQLLEEL

GHLQEEEETLRQQVNQAEREHDLNKGAELKFGQLEALQQQRQAIEEQIQALHANGQTLLREQVEEADIAEIVARWTNIPV

QRLLESERQKLLQLESFLHQRVIGQDEAVVAVAAAIRRARAGMKDPSRPIGSFLFLGPTGVGKTELARALANCLFDAEDA

LIRFDMSEYMEKNSISRLIGAPPGYIGYEEGGQLSEAIRRHPYAVVLFDEVEKAHPDVFNLLLQVLDDGRITDSQGRTID

FCNAVIVMTSNIGSQFILEMGEEDTSLEAVELKVLGALRQHFRPEFLNRIDDTILFQPLSRSQLQQIVDIQLQRLKRLLA

EQAIALTVTPAAAANLADRGYDPVYGARPLKRAIQRLVENPVASLILEQQFEAGDSLIVDVDAEGQLQFQVSKPVAATVV

EPDDSPAIEVEAIPS

Nucleotide

Download Length: 2688 bp

                                >NTDB_id=844606 VZG88_RS12670 WP_208678072.1 2511574..2514261(-) (clpC) [Synechococcus elongatus IITB6]

ATGCAGCCCACCGACCCCAATCGTTTTACAGACCAAGCCTGGGATGCGATCGTCGAATCGCAAACTGTGGCTCGCCAACT

GCGGCAGCAGCAGTTGGAGGTTGAGCACGTCCTGCTGGCTTTGCTCGATCAGGAGTCGGGGGTTGCGGCGGAAATTTTGG

CGAAAGCAGGGGTAGCCGTTGCGAATCTGCGGCAGCCACTTGAGGATTTTGCGCGGCGACAACCTCGTAATGCCACAGGG

ACTCAGCTCTACCTCGGGCGCGGCCTCGATCGCCTGCTGGATTTAGCGGAACGGGCGAGGGAACTCTGGCAAGACGAGTT

CATCGGCGTTGAACATTTGCTGATGGGCTTTGTCGAGGACGATCGGATTGGCCGCCGCCTCTGCCAAGGCTTCAAGCTCG

ATGCCAAAACGCTGGAGACAACCATTCAAGAGCTGCGATCGCCCGCTGCCGATGAGGCTGATGCGGAAGAGAGCGAACCC

AGCTATCCCTTCCTGAGCAAATACGGTCGTGATCTGACGGCACTAGCCGAGCAGGAAAAACTCGATCCAGTGATTGGTCG

CGATCTAGAGATTCGTCGCGTCATTCAGGTGCTGTCGCGGCGTAGCAAGAACAATCCTGTGCTGATTGGTGAGCCGGGTG

TCGGCAAAACTGCGATCGCGGAAGGCTTAGCGCAGCGGATTGTCGCTGGTGAAGTCCCGGATTCGCTCAAGCAACGGCGA

CTGATCAGCCTCGATATGGGTTCGTTGATCGCTGGCGCCAAATATCGCGGCGAATTTGAAGAGCGGCTGCGGGCGGTTCT

GCACGAAGTCACCCACTCCGATGGACAAATGGTGCTGTTCATCGACGAGCTGCACACTGTCGTCGGAGCTGGCGCGGGGC

AGCAAGGCAGCGCCATGGATGCGGGCAACCTGCTCAAGCCGATGCTGGCACGGGGTGAGCTGCGCTGTATCGGGGCCACA

ACGACCGACGAGTATCGCCGCACGATCGAGAAGGATCCGGCCCTAGAACGCCGCTTCCAACAGGTCTACGTCAGCCAGCC

CAGCGTCGAAGACACGATCGCGATTCTGCGTGGCCTCAAGGAACGGTACGAAGGCCACCACGGCGTCAAGATCACCGACG

GTTCACTGATTGCAGCAGCCAAACTCTCGCACCGCTACATCAGCGATCGCTTCTTGCCGGACAAGGCGATCGACCTGATC

GACGAAGCCTCGGCGCAGCTAAAGATGGAGATTACCTCCAAGCCCAGTGAGCTGGAGGATTTGGAACGACGGCTCCTGCA

ACTGGAAATGGAGCAGCTTTCCCTCAGCGGCGAGAACGGACAGGCAACAGTTCACAGCGATCGCCTTCAGCAAATCCAGA

CAGAGCTGCAAACGCTGCAAGAACAGCAAGCCCGGCTCAATCAACAGTGGCAGCAGGAAAAACAACTGCTGGAAGAACTG

GGCCATCTGCAGGAGGAAGAAGAAACCCTGCGTCAGCAGGTCAATCAGGCCGAGCGCGAACATGACCTCAACAAAGGCGC

TGAGCTGAAATTTGGGCAACTGGAAGCCCTGCAACAACAGCGGCAGGCGATCGAGGAACAGATTCAAGCCCTGCACGCCA

ATGGGCAAACCTTGCTGCGTGAGCAGGTAGAAGAAGCCGATATTGCCGAAATTGTGGCGCGCTGGACGAATATCCCCGTG

CAGCGGCTACTGGAATCGGAACGCCAGAAGCTGCTCCAGCTCGAAAGTTTCTTACACCAACGGGTCATTGGCCAAGATGA

AGCGGTCGTCGCCGTCGCTGCCGCGATTCGCCGTGCCCGCGCTGGCATGAAAGATCCCAGCCGCCCGATCGGTTCTTTCC

TCTTCCTCGGACCAACGGGCGTCGGTAAAACCGAACTGGCTCGCGCCCTCGCCAACTGTCTGTTTGATGCGGAAGATGCA

CTGATCCGCTTCGACATGTCGGAGTACATGGAGAAGAATTCCATCTCGCGGCTAATTGGCGCGCCCCCCGGCTACATCGG

CTACGAAGAGGGCGGTCAGCTCTCAGAAGCCATCCGCCGCCATCCCTACGCGGTAGTGCTGTTCGATGAAGTCGAGAAGG

CGCACCCCGATGTCTTCAACCTGTTGCTACAGGTTCTGGATGATGGCCGGATTACCGACTCACAAGGCCGCACCATTGAC

TTCTGCAACGCCGTGATTGTGATGACTAGCAACATCGGCAGCCAGTTCATTCTGGAAATGGGCGAAGAAGACACCAGCCT

CGAAGCCGTGGAGCTGAAAGTACTAGGGGCGCTAAGACAGCACTTCCGTCCGGAATTTCTCAACCGGATTGATGACACCA

TCCTGTTCCAGCCACTCTCGCGCAGCCAGCTCCAGCAAATTGTCGACATCCAGTTACAGCGGCTGAAACGGCTACTGGCA

GAACAGGCGATCGCCCTCACGGTCACGCCAGCAGCGGCGGCCAATCTCGCCGATCGTGGCTACGACCCGGTCTACGGGGC

ACGCCCACTCAAACGAGCAATCCAGCGTTTGGTCGAGAATCCGGTAGCTTCGTTGATTCTCGAGCAGCAGTTTGAAGCCG

GCGACTCGCTGATCGTCGATGTGGATGCCGAAGGACAGTTGCAATTTCAAGTCAGTAAACCCGTTGCAGCGACTGTCGTT

GAGCCGGATGATAGCCCCGCGATCGAAGTTGAAGCCATTCCCTCCTAG