Detailed information NTG0084459

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: L6410_RS01125
• Genome accession: NZ_AP024276
• Coordinates: 218317..220770 (+)
• Length: 817 a.a.
• NCBI ID: WP_024391635.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain SUT-286
• Function: degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 213317..225770

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L6410_RS01090 (SUT286_01980)	nusG	213486..214025 (+)	540	WP_002940254.1	transcription termination/antitermination protein NusG	-
L6410_RS01095 (SUT286_01990)	-	214260..214451 (-)	192	WP_024391630.1	hypothetical protein	-
L6410_RS01105 (SUT286_02000)	rpsB	215240..216016 (+)	777	WP_024391631.1	30S ribosomal protein S2	-
L6410_RS01110 (SUT286_02010)	tsf	216172..217212 (+)	1041	WP_024391632.1	translation elongation factor Ts	-
L6410_RS01115 (SUT286_02020)	traF	217371..217709 (-)	339	WP_024391633.1	conjugal transfer protein TraF	-
L6410_RS01120 (SUT286_02030)	-	217853..218311 (+)	459	WP_024391634.1	CtsR family transcriptional regulator	-
L6410_RS01125 (SUT286_02040)	clpC	218317..220770 (+)	2454	WP_024391635.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
L6410_RS01130 (SUT286_02050)	-	220985..221134 (+)	150	Protein_203	cytidyltransferase	-
L6410_RS01135 (SUT286_02060)	-	221692..221925 (+)	234	WP_024391636.1	hypothetical protein	-
L6410_RS01140 (SUT286_02070)	-	221922..222164 (+)	243	WP_024391637.1	hypothetical protein	-
L6410_RS01145 (SUT286_02080)	dusB	222291..223295 (-)	1005	WP_237395639.1	tRNA dihydrouridine synthase DusB	-
L6410_RS01150 (SUT286_02090)	hslO	223288..224154 (-)	867	WP_024391639.1	Hsp33 family molecular chaperone HslO	-
L6410_RS01155	-	224359..225649 (-)	1291	Protein_208	IS4 family transposase	-

Sequence

Protein

• Length: 817 a.a.
• Molecular weight: 90628.04 Da
• Isoelectric Point: 5.9905

>NTDB_id=84459 L6410_RS01125 WP_024391635.1 218317..220770(+) (clpC) [Streptococcus parasuis strain SUT-286]
MKISTGLQRVFEDAQLIAQRYACDHLETWHILLAFVINHDTVAGAVLAEYPMSISDFEHATFVVTEKVYREELDKFNILP
SSKRLDDTAQFARKIAEVVKAKELGSEHLFQAMLLDKRSTASQILDKVGFHFEEIEDEFRFVDLRKNLEYRAGFTKEDLK
AIRSVMKGGKAKTASVGQMMGMPPTAQSGGLEDYTRDLTALAREGKIEPVIGRDAEISRMIQILSRKTKNNPVLVGDAGV
GKTALALGLAQRVAAGDVPVGLAKMRVLELDLMNVIAGTRFRGDFEERMNNIINDIEEDGQVILFIDELHTIMGSGSGID
STLDAANILKPALARGTLRTVGATTQDEYQKHIEKDAALVRRFAKVTIEEPTVEDSIAILTGLKGTFEKYHRVRIGDATV
ETAVTYAKRYLTSKNLPDSAIDLLDEASATVQNRVKGQAEETGLTSIDKALMDKKYKTVSKLLIKTKEDAEASQNYDLEV
TEEDVLETLSRLSGIPVAKLSQSDTKKYLNLEVELHKRVIGQEEAISAVSRAIRRNQSGIRTGRRPIGSFMFLGPTGVGK
TELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLL
QVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGALDLSKDHKEVEKRIFEELKKAYRPEFINRIDEKVVF
HSLTETHMQDVVKVMIKPLLAVTAEKGINLKLQPSALKLLAKQGYDPEMGARPLRRLLQTKLEDPLAEMLLRGDLTTGST
LKVGVKGEELKFDVVKG

Nucleotide

• Length: 2454 bp

>NTDB_id=84459 L6410_RS01125 WP_024391635.1 218317..220770(+) (clpC) [Streptococcus parasuis strain SUT-286]
ATGAAAATTTCAACAGGCTTACAACGGGTTTTTGAAGATGCTCAGTTGATTGCCCAACGGTATGCATGCGATCATTTAGA
AACGTGGCATATTTTGCTAGCATTTGTCATCAATCACGATACGGTAGCTGGTGCTGTTTTGGCAGAATACCCAATGAGTA
TTTCAGATTTCGAACATGCTACTTTTGTTGTTACAGAAAAAGTATACCGTGAAGAATTGGATAAATTTAATATTCTACCC
TCCTCAAAGAGATTAGACGATACAGCTCAGTTCGCTAGAAAGATTGCAGAAGTCGTTAAGGCAAAAGAATTAGGAAGCGA
GCATTTGTTTCAGGCAATGCTGTTAGACAAACGTTCGACCGCAAGTCAAATTCTAGATAAAGTAGGTTTTCATTTTGAAG
AGATAGAAGATGAATTCCGTTTTGTTGATTTGCGTAAAAACTTAGAGTATCGTGCAGGATTCACCAAAGAAGATTTGAAA
GCTATCCGTAGCGTGATGAAAGGTGGAAAGGCTAAAACAGCAAGTGTAGGTCAAATGATGGGCATGCCACCAACTGCTCA
AAGTGGTGGATTGGAGGATTATACACGAGATCTGACAGCCTTAGCCCGCGAGGGGAAAATTGAACCTGTTATTGGTCGCG
ATGCTGAAATTTCACGGATGATTCAAATTCTATCACGTAAAACGAAGAACAACCCAGTTCTAGTTGGTGATGCTGGTGTC
GGAAAAACTGCGCTTGCTTTGGGTCTTGCTCAACGTGTTGCTGCAGGTGATGTCCCTGTCGGCTTGGCTAAGATGCGGGT
TTTGGAACTTGACTTGATGAACGTTATTGCAGGAACTCGTTTCCGTGGTGACTTTGAAGAGCGGATGAATAATATCATCA
ATGATATTGAAGAAGATGGTCAGGTTATCCTCTTTATTGATGAATTGCATACTATTATGGGGTCGGGTTCGGGAATTGAT
TCAACCTTAGATGCTGCCAATATTCTCAAACCGGCCTTGGCTCGAGGGACCCTACGCACTGTTGGTGCAACGACACAGGA
TGAATACCAAAAGCATATTGAAAAAGATGCTGCCCTGGTCCGTCGTTTTGCCAAAGTGACTATTGAAGAGCCGACAGTTG
AGGACAGTATAGCCATTTTGACAGGGCTTAAAGGAACTTTTGAAAAATACCATAGGGTCCGTATTGGAGATGCGACTGTT
GAGACAGCTGTGACCTACGCTAAGCGGTATTTGACCAGTAAAAACCTGCCAGATTCTGCCATTGATTTGCTGGATGAAGC
CAGTGCAACGGTACAAAATCGAGTGAAAGGGCAGGCTGAGGAAACAGGACTGACGAGTATTGACAAGGCCTTGATGGATA
AAAAATATAAGACTGTCAGCAAGCTTTTGATTAAAACGAAAGAAGATGCTGAGGCTAGTCAAAACTATGACCTTGAAGTA
ACAGAAGAAGATGTTTTAGAAACACTTAGCCGCTTGTCAGGTATCCCAGTAGCCAAGCTTAGCCAATCAGATACTAAGAA
GTATCTGAATCTGGAAGTAGAATTGCACAAGCGTGTGATTGGGCAGGAAGAAGCTATTTCTGCAGTTAGCAGAGCTATTC
GCCGTAATCAGTCAGGGATTCGTACAGGTCGCAGACCGATTGGTTCCTTTATGTTCTTGGGACCAACTGGTGTCGGTAAG
ACAGAGCTTGCTAAAGCCTTGGCAGAGGTTCTCTTTGATGATGAATCTGCTCTTATCCGTTTTGATATGTCTGAGTATAT
GGAGAAATTTGCGGCCAGCCGTCTCAATGGAGCGCCTCCAGGCTACGTGGGCTATGAAGAAGGTGGCGAATTGACGGAGA
AAGTTCGTAACAAACCTTATTCTGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCATCCAGATATTTTCAATGTTCTCTTG
CAGGTCTTGGATGATGGTGTTTTGACAGACAGTAAGGGACGTAAGGTTGATTTCTCAAATACTATTATTATCATGACGTC
AAACCTTGGAGCAACAGCCCTTCGTGATGATAAGACAGTTGGTTTTGGTGCCCTTGATTTATCTAAGGACCACAAGGAAG
TGGAGAAACGCATTTTTGAGGAATTGAAAAAAGCCTATCGTCCAGAATTTATCAACCGTATTGACGAGAAAGTTGTCTTC
CATAGCTTGACGGAAACTCATATGCAGGATGTTGTCAAGGTCATGATTAAACCTTTGTTGGCTGTAACAGCTGAGAAAGG
AATTAACCTTAAACTGCAACCGTCAGCCCTTAAGTTATTGGCTAAACAAGGTTACGACCCAGAAATGGGGGCTCGTCCTC
TTCGTAGACTCTTACAAACCAAATTGGAAGATCCGTTGGCAGAAATGTTGCTCCGTGGTGACCTGACTACTGGTTCGACC
TTGAAGGTTGGGGTCAAGGGCGAAGAGCTCAAGTTTGATGTGGTAAAGGGTTAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (545-716)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (723-803)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (102-137)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (14-49)

• AAA lid domain (AAA_lid_9) (372-457)

• ATPase family associated with various cellular activities (AAA) (AAA) (233-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus pneumoniae TIGR4	71.656	99.755	0.715
clpC	Streptococcus pneumoniae Rx1	71.656	99.755	0.715
clpC	Streptococcus pneumoniae D39	71.656	99.755	0.715
clpC	Streptococcus mutans UA159	66.339	99.633	0.661
clpC	Streptococcus thermophilus LMD-9	64.763	100	0.652
clpC	Streptococcus thermophilus LMG 18311	65.196	99.878	0.651
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	49.157	100	0.499
clpC	Bacillus subtilis subsp. subtilis str. 168	43.301	100	0.443