Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L6410_RS00835 Genome accession   NZ_AP024276
Coordinates   162650..164017 (+) Length   455 a.a.
NCBI ID   WP_024391587.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 157650..169017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS00805 (SUT286_01420) - 157836..158438 (-) 603 WP_024391582.1 NADPH-dependent FMN reductase -
  L6410_RS00810 (SUT286_01430) - 158610..160361 (-) 1752 WP_237395190.1 IS1634 family transposase -
  L6410_RS00815 (SUT286_01440) - 160555..160914 (+) 360 WP_024396693.1 YbaN family protein -
  L6410_RS00820 (SUT286_01450) - 161109..161633 (+) 525 WP_024396692.1 hypothetical protein -
  L6410_RS00825 (SUT286_01460) - 161660..162103 (+) 444 WP_024396680.1 dUTP diphosphatase -
  L6410_RS00830 (SUT286_01470) - 162110..162643 (+) 534 WP_024391586.1 histidine phosphatase family protein -
  L6410_RS00835 (SUT286_01480) radA 162650..164017 (+) 1368 WP_024391587.1 DNA repair protein RadA Machinery gene
  L6410_RS00840 (SUT286_01490) - 164141..164635 (+) 495 WP_024391588.1 beta-class carbonic anhydrase -
  L6410_RS00845 (SUT286_01500) - 164831..165589 (+) 759 WP_024391589.1 TIGR00266 family protein -
  L6410_RS00850 (SUT286_01510) - 165761..166207 (+) 447 WP_024396677.1 LytTR family DNA-binding domain-containing protein -
  L6410_RS00855 (SUT286_01520) - 166212..166886 (+) 675 WP_237395610.1 LiaF transmembrane domain-containing protein -
  L6410_RS00860 (SUT286_01530) - 166801..168252 (+) 1452 WP_336512755.1 MFS transporter -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49901.41 Da        Isoelectric Point: 6.1911

>NTDB_id=84458 L6410_RS00835 WP_024391587.1 162650..164017(+) (radA) [Streptococcus parasuis strain SUT-286]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVTEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=84458 L6410_RS00835 WP_024391587.1 162650..164017(+) (radA) [Streptococcus parasuis strain SUT-286]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGTCC
AAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCACTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAGCTCAATGAAGTTTCCTCCATTCAAGTGGCTCGCACCAAGACCAACATGGAGGAGTTCAAC
CGGGTCCTCGGTGGCGGTGTGGTCCCAGGCAGTCTGGTCCTGATTGGAGGCGATCCAGGAATCGGGAAATCCACCCTGCT
TTTACAGGTATCTACCCAGCTTTCTACTATTGGCACGGTCCTCTATGTGTCGGGGGAAGAATCTGCCCAGCAGATTAAGT
TGCGGGCGGAGCGTCTGGGCGACATCGATAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GTCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGTTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTCCTCAATCCAAGCGAAGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCTG
CGATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCTGAAGTGCAGGCCCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGATTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCTGGTGGTGTTAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAGATTGGTCTGACAGGTGAA
ATCCGCCGTGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAAGTCTATGCTCCTAAAAA
TTCCCTGACCGGTATCAAGGTGCCCAAGGAAATCACGGTTATCGGCGTGACAACAATTGGCGAAGTCTTGCAAAAAGTGT
TTAACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment