Detailed information NTG0844579

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: VZG88_RS06495
• Genome accession: NZ_CP143871
• Coordinates: 1324058..1325290 (-)
• Length: 410 a.a.
• NCBI ID: WP_208678882.1
• Uniprot ID: -
• Organism: Synechococcus elongatus IITB6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1319058..1330290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZG88_RS06475 (VZG88_06475)	rfbC	1320260..1320811 (-)	552	WP_208678885.1	dTDP-4-dehydrorhamnose 3,5-epimerase	-
VZG88_RS06480 (VZG88_06480)	dusA	1321244..1322257 (-)	1014	WP_208679095.1	tRNA dihydrouridine(20/20a) synthase DusA	-
VZG88_RS06485 (VZG88_06485)	-	1322284..1323516 (+)	1233	WP_208678884.1	NAD(P)/FAD-dependent oxidoreductase	-
VZG88_RS06490 (VZG88_06490)	-	1323496..1324053 (-)	558	WP_208678883.1	hypothetical protein	-
VZG88_RS06495 (VZG88_06495)	pilC	1324058..1325290 (-)	1233	WP_208678882.1	type II secretion system F family protein	Machinery gene
VZG88_RS06500 (VZG88_06500)	pilT	1325314..1326402 (-)	1089	WP_208678881.1	type IV pilus twitching motility protein PilT	Machinery gene
VZG88_RS06505 (VZG88_06505)	pilB/pilB1	1326474..1328474 (-)	2001	WP_208678880.1	GspE/PulE family protein	Machinery gene
VZG88_RS06510 (VZG88_06510)	grpE	1328751..1329374 (+)	624	WP_338438663.1	nucleotide exchange factor GrpE	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45290.28 Da
• Isoelectric Point: 5.1171

>NTDB_id=844579 VZG88_RS06495 WP_208678882.1 1324058..1325290(-) (pilC) [Synechococcus elongatus IITB6]
MPTFVAQVRDSHGAIRELRIRSGNVRQARVELRQMGLVIQTIDESVGFSLANLSSFNLEEATSKVTVKDMALFSRQLSSL
VDAGVPIVRALGLLTEQTRNPKLRKALRQINLDVQEGLNLSDSMRKFPNIFDGLYVAMIQAGETGGVLDDVLNRLSKLLE
DMSRLRNQMKSAMTYPMAVFVIAILVFLGMTIFIIPTFAGIFEDQGAELPDFTLFLLSISETLRTPIFWGLFLVFLFGSI
FVFKQYYATPLGCLSVDSMILRLPILGEMIQKAATARFCRTFGSLTRAGVPIMTALEIVRDTAGNQAIAQSIDAARMEVQ
TGGMMSVALARYRIFPMMALSMITIGEETGELDTMVNKVADFYEDEVEQAVKGLTSLLEPIMIVLVGGIVGSILLAMYLP
MFSIFDQIKG

Nucleotide

• Length: 1233 bp

>NTDB_id=844579 VZG88_RS06495 WP_208678882.1 1324058..1325290(-) (pilC) [Synechococcus elongatus IITB6]
ATGCCAACTTTTGTTGCTCAAGTTCGTGACAGTCATGGTGCTATCCGTGAACTGCGCATTCGATCTGGAAACGTTCGTCA
AGCGCGTGTTGAGCTGCGCCAAATGGGCTTGGTTATCCAAACCATTGATGAGTCAGTCGGATTCTCTCTCGCTAATCTCA
GTAGCTTCAATTTGGAAGAGGCGACAAGTAAAGTTACGGTAAAAGATATGGCTTTGTTTTCTCGCCAGCTATCTTCACTG
GTAGATGCAGGTGTTCCGATCGTCAGAGCCTTAGGACTGCTAACAGAGCAAACCCGTAATCCTAAGCTTAGAAAAGCACT
CAGACAGATTAATCTTGATGTTCAAGAAGGTCTGAATCTTTCAGATTCAATGCGTAAGTTTCCTAATATCTTTGATGGTT
TATACGTTGCTATGATTCAAGCTGGCGAAACGGGGGGGGTGTTGGATGATGTTTTAAACCGGCTTTCTAAATTACTGGAA
GATATGTCTCGGCTTCGCAACCAGATGAAATCGGCGATGACCTATCCAATGGCAGTTTTTGTTATTGCCATTCTTGTTTT
TCTGGGTATGACAATTTTTATCATTCCTACATTCGCAGGAATTTTTGAAGATCAAGGTGCAGAGCTTCCAGACTTTACGT
TATTTCTATTATCGATTAGTGAGACGTTAAGGACACCAATTTTTTGGGGACTGTTCCTGGTCTTTTTATTTGGTTCTATT
TTTGTCTTTAAACAGTATTATGCAACTCCACTTGGGTGTCTCAGTGTAGATAGTATGATTTTGCGTCTGCCTATCTTGGG
AGAAATGATTCAGAAGGCAGCAACAGCTCGCTTTTGTCGAACTTTTGGTTCGCTGACACGGGCAGGGGTTCCTATCATGA
CTGCACTCGAAATTGTACGAGATACCGCAGGTAATCAAGCGATCGCCCAATCAATTGATGCTGCCCGAATGGAAGTGCAA
ACTGGTGGGATGATGAGCGTGGCTCTAGCACGCTATCGAATCTTTCCAATGATGGCCTTGAGTATGATTACGATTGGAGA
GGAGACGGGTGAGCTAGACACAATGGTCAATAAAGTTGCCGACTTTTATGAAGATGAAGTGGAACAAGCTGTTAAGGGTC
TGACAAGTCTGTTGGAGCCAATTATGATTGTTCTAGTCGGCGGTATCGTTGGCTCAATCCTGCTGGCGATGTATTTGCCA
ATGTTTAGCATTTTCGATCAGATCAAAGGGTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (73-196)

• Type II secretion system (T2SS), protein F (T2SSF) (278-400)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	41.728	98.78	0.412