Detailed information NTG0844575

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: VZG88_RS05515
• Genome accession: NZ_CP143871
• Coordinates: 1114435..1117062 (-)
• Length: 875 a.a.
• NCBI ID: WP_208679111.1
• Uniprot ID: -
• Organism: Synechococcus elongatus IITB6
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1109435..1122062

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VZG88_RS05485 (VZG88_05485)	ndhI	1110082..1110690 (+)	609	WP_208679011.1	NAD(P)H-quinone oxidoreductase subunit I	-
VZG88_RS05490 (VZG88_05490)	-	1110694..1111299 (+)	606	WP_208672695.1	NADH-quinone oxidoreductase subunit J	-
VZG88_RS05495 (VZG88_05495)	nuoK	1111318..1111629 (+)	312	WP_208679010.1	NADH-quinone oxidoreductase subunit NuoK	-
VZG88_RS05500 (VZG88_05500)	-	1111853..1113490 (+)	1638	WP_338438642.1	iron uptake porin	-
VZG88_RS05505 (VZG88_05505)	-	1113622..1113759 (+)	138	WP_208679009.1	YHYH domain-containing protein	-
VZG88_RS05510 (VZG88_05510)	-	1113803..1114297 (+)	495	WP_208679008.1	hypothetical protein	-
VZG88_RS05515 (VZG88_05515)	clpC	1114435..1117062 (-)	2628	WP_208679111.1	ATP-dependent chaperone ClpB	Regulator
VZG88_RS05520 (VZG88_05520)	petE	1117233..1117610 (-)	378	WP_208676678.1	plastocyanin	-
VZG88_RS05525 (VZG88_05525)	-	1117658..1118614 (-)	957	WP_338438643.1	NAD(P)-dependent oxidoreductase	-
VZG88_RS05530 (VZG88_05530)	hemE	1118636..1119700 (-)	1065	WP_208679007.1	uroporphyrinogen decarboxylase	-

Sequence

Protein

• Length: 875 a.a.
• Molecular weight: 98822.58 Da
• Isoelectric Point: 5.0893

>NTDB_id=844575 VZG88_RS05515 WP_208679111.1 1114435..1117062(-) (clpC) [Synechococcus elongatus IITB6]
MQPTDPNRFTEKAWEAIVRTTDVAKQAQHQQIETEHLFLVLLQEPGLALNILKKAGLETSRLQQFTEQFIARQPKVSGGN
QSVYLGRSLDQLLDQAEQFRKDFDDEFISIEHLILSFPRDSRFGRLLSQEFKVDEKQLRQVIQQIRGSQKVTDQNPEGKY
EALEKYGRDLTEMARLGKLDPVIGRDDEIRRTVQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGDVPQSLKDRRLI
ALDMGALIAGAKFRGEFEERLKAVLKEVTDSEGIIILFIDEIHTVVGAGATQGSMDAGNLLKPMLARGELRCIGATTLDE
YRQYIEKDAALERRFQQVFVDQPSVEDTISILRGLKERYEVHHGVRISDNALVAAAVLSTRYISDRFLPDKAIDLVDESA
ARLKMEITSKPEELDEIDRKILQLEMERLSLRKESDTASQERLQRLEKELANLKEDQRSLSSQWKAEKDVLEDIKSVREE
IDQVNLKIQQAERDYDLNKAAELKYGKLTELQRKLAEMEHGLAATQTGGKSLLREEVTEVDIAEIISKWTGIPVSKLVES
EMQKLLNLDSELHQRVIGQDEAVSAVADAIQRSRAGLSDPKRPIASFIFLGPTGVGKTELAKALAAYLFDTEDAMIRIDM
SEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSRGRTVDFKNTIL
ILTSNIGSQFILDVAGDDSRYEEMRSRVTDALRANFRPEFLNRVDETIIFHSLRKDQLQQIVRIQLQRLEERLSDRKLAL
SMTPEAVDFLVDVGFDPVYGARPLKRVIQRELETAIAKAILRGEFRDGDTIQVAVENGRLIFQSIAAPAATTTIS

Nucleotide

• Length: 2628 bp

>NTDB_id=844575 VZG88_RS05515 WP_208679111.1 1114435..1117062(-) (clpC) [Synechococcus elongatus IITB6]
ATGCAACCGACAGATCCCAATCGATTTACTGAAAAAGCCTGGGAAGCGATCGTTCGTACTACGGATGTTGCGAAACAAGC
TCAGCATCAGCAAATTGAAACTGAACACTTGTTTCTAGTGCTGTTGCAAGAGCCAGGTTTAGCGCTCAATATCCTCAAAA
AAGCAGGCTTAGAAACCAGTCGCTTGCAGCAATTTACTGAGCAGTTCATAGCACGTCAGCCCAAGGTCAGTGGAGGTAAT
CAATCAGTTTATTTGGGGCGATCGCTCGATCAGTTACTGGATCAAGCAGAACAATTTCGTAAGGATTTTGATGATGAGTT
CATCTCTATTGAGCACCTGATCCTGAGTTTCCCCCGTGACTCTCGTTTTGGGCGATTGCTCAGTCAAGAGTTTAAGGTTG
ATGAAAAGCAACTCCGTCAGGTTATTCAACAGATTCGAGGCAGCCAAAAAGTGACTGATCAAAATCCCGAAGGTAAATAC
GAAGCCCTCGAAAAATATGGGCGTGACCTCACCGAAATGGCTCGCCTTGGTAAGTTAGATCCGGTGATTGGTCGCGATGA
TGAAATTCGGCGTACTGTGCAGATTCTCAGTCGACGCACTAAAAACAATCCGGTTTTGATTGGTGAGCCTGGGGTTGGGA
AAACGGCGATCGCAGAGGGCCTTGCTCAGCGGATTATCAATGGTGATGTGCCCCAGTCACTGAAGGATCGACGTCTGATT
GCCTTGGATATGGGCGCTTTAATCGCTGGTGCTAAATTCCGTGGTGAATTTGAAGAACGCCTGAAAGCAGTTCTGAAAGA
AGTCACTGATTCTGAAGGCATTATCATCCTTTTTATTGATGAAATTCATACGGTTGTCGGTGCTGGGGCAACCCAAGGCT
CGATGGATGCTGGCAACTTGCTGAAGCCAATGTTGGCTCGCGGTGAGCTGCGTTGTATTGGAGCAACGACGCTCGATGAA
TATCGCCAGTACATTGAAAAGGATGCGGCACTGGAGCGACGCTTCCAACAGGTTTTTGTCGATCAACCCTCGGTTGAAGA
CACAATCTCTATTCTCCGAGGCTTGAAAGAACGCTATGAAGTTCACCATGGCGTTCGTATTTCCGACAATGCATTGGTTG
CAGCAGCTGTGCTTTCAACCCGCTACATTAGCGATCGCTTTCTACCGGATAAAGCGATCGACTTGGTTGATGAATCTGCA
GCGCGCCTCAAAATGGAGATCACTTCAAAACCTGAGGAGCTGGATGAAATCGATCGCAAAATTCTCCAGTTAGAAATGGA
GCGACTCTCTCTGCGTAAAGAGAGCGATACCGCTTCACAGGAGCGACTGCAACGGCTCGAAAAAGAACTGGCAAATCTTA
AAGAAGACCAGCGCAGTTTAAGCAGTCAATGGAAAGCTGAAAAAGATGTCCTCGAAGATATTAAGTCTGTCCGCGAGGAG
ATTGATCAGGTCAACCTCAAAATCCAGCAGGCTGAGCGAGATTATGATCTGAACAAAGCTGCTGAACTGAAATATGGCAA
GCTAACTGAGCTGCAGCGGAAACTTGCAGAAATGGAGCATGGTTTGGCTGCAACGCAAACTGGCGGTAAGTCTCTGTTGC
GAGAAGAAGTGACCGAGGTTGATATCGCTGAAATCATCTCGAAATGGACCGGAATTCCGGTCAGTAAGCTTGTTGAGTCA
GAAATGCAAAAGCTACTCAACTTGGATAGTGAGCTGCATCAGCGGGTCATTGGTCAAGATGAGGCTGTTTCTGCAGTTGC
CGATGCAATTCAGCGATCGCGAGCTGGCTTATCTGATCCGAAACGACCGATCGCGAGTTTCATTTTCCTTGGCCCAACTG
GAGTTGGTAAAACTGAGCTTGCCAAAGCCCTAGCTGCTTATCTGTTTGATACGGAAGATGCGATGATTCGCATCGATATG
TCGGAATATATGGAAAAACATGCGGTCTCGCGGCTAATTGGTGCACCTCCTGGCTATGTTGGCTATGACGAAGGCGGTCA
ACTGACCGAAGCGGTGCGGCGACGTCCTTATTCCGTCATCTTGTTTGATGAGATCGAGAAGGCACATCCTGATGTCTTTA
ACGTCATGTTGCAGATTCTCGATGATGGTCGGGTGACGGATAGTCGAGGTCGGACAGTTGACTTCAAGAACACAATCTTG
ATTCTGACCAGCAATATTGGCTCACAATTCATCCTGGATGTTGCAGGAGATGATAGCCGCTACGAAGAAATGCGGAGTCG
TGTCACCGATGCGTTGCGCGCTAATTTCCGGCCGGAATTCCTCAACCGTGTGGATGAAACAATCATCTTCCACAGTCTGC
GGAAGGATCAGCTTCAGCAAATTGTTCGCATTCAACTCCAGCGTCTTGAAGAGCGGCTGAGCGATCGCAAGCTAGCGTTA
TCAATGACTCCTGAAGCGGTCGATTTCCTAGTAGATGTTGGTTTCGATCCAGTCTATGGGGCGCGCCCTCTCAAACGGGT
CATCCAGCGAGAACTTGAAACTGCGATCGCCAAAGCCATCCTTCGCGGTGAGTTTCGTGATGGCGATACCATCCAAGTTG
CGGTTGAAAATGGACGGCTTATCTTCCAATCGATCGCCGCCCCAGCAGCAACGACGACGATTAGTTAG

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (205-337)

• AAA lid domain (AAA_lid_9) (344-446)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (23-70)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-147)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (773-853)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-766)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.194	99.771	0.471
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.841	100	0.431
clpE	Streptococcus pneumoniae TIGR4	49.12	77.943	0.383
clpE	Streptococcus pneumoniae Rx1	48.755	78.057	0.381
clpE	Streptococcus pneumoniae D39	48.755	78.057	0.381
clpE	Streptococcus pneumoniae R6	48.755	78.057	0.381