Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   VZG88_RS02630 Genome accession   NZ_CP143871
Coordinates   521555..524329 (+) Length   924 a.a.
NCBI ID   WP_208677660.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516555..529329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG88_RS02605 (VZG88_02605) - 516795..517409 (-) 615 WP_208677656.1 hypothetical protein -
  VZG88_RS02610 (VZG88_02610) - 517530..518291 (+) 762 WP_208677657.1 YebC/PmpR family DNA-binding transcriptional regulator -
  VZG88_RS02615 (VZG88_02615) - 518315..518491 (+) 177 WP_208677658.1 hypothetical protein -
  VZG88_RS02620 (VZG88_02620) - 518540..519022 (+) 483 WP_208672876.1 chemotaxis protein CheW -
  VZG88_RS02625 (VZG88_02625) - 519042..521552 (+) 2511 WP_208677659.1 methyl-accepting chemotaxis protein -
  VZG88_RS02630 (VZG88_02630) pilL-C 521555..524329 (+) 2775 WP_208677660.1 hybrid sensor histidine kinase/response regulator Machinery gene
  VZG88_RS02635 (VZG88_02635) - 524333..524569 (+) 237 WP_208677661.1 hypothetical protein -
  VZG88_RS02640 (VZG88_02640) - 524856..526232 (+) 1377 WP_208677662.1 glycosyltransferase family 2 protein -
  VZG88_RS02645 (VZG88_02645) - 526363..527430 (+) 1068 WP_208677663.1 Mrp/NBP35 family ATP-binding protein -
  VZG88_RS02650 (VZG88_02650) rodA 527480..528745 (+) 1266 WP_208677664.1 rod shape-determining protein RodA -

Sequence

Protein


Download         Length: 924 a.a.        Molecular weight: 102475.38 Da        Isoelectric Point: 4.3741

>NTDB_id=844564 VZG88_RS02630 WP_208677660.1 521555..524329(+) (pilL-C) [Synechococcus elongatus IITB6]
MSPTSDNVLRSLFLRETRENLQLLSNTLSQLEAGLPEATTLADASRAAHSLKGAAALLKFETFRQLAAGLESCLSLLAEA
ELPDYAASLPLFQQTTTLLVTATDRIEADADDLGLLPDEGQHLVEQLTRLQGTLETALHTPVDQQEVVENTLEDLLSQDF
EPVLPPADPSLDETLDALLGDLEELGKPADSDDDRPLLEELNFDLEDWIEASEEASQAAEVDVAAQLKVLEAAIADLTQQ
SQEQPLTLGIDPAVLSAVIQAPPRLPVTLTLEPVAKARSQDRGPVAFEQTLRVPVRQLDNLSNLVGEIVVSRNTLESDQS
HLRETLENLMLQVHQLGDLGERMRELYERSLLETALAARRQLVGAPSAVATSNLSTFPTDQFDDLELDRFSGFHSISQEM
MELLVRLREAASDIDFMVNEPFDQLTRNFQQITLQLQSELNQTRMVPFSDLTDQLPRAVREISRRCGKGAHLEIEGQDIL
IDKMILQKLQAPMTHLINNALSHGIETAEVRQYRNKSPEGTLVVRASLQGNRTLITVSDDGAGIDAEQVKIKALSRGLIT
PEEAAGMRVREIYELLFRPGFSTRDQADELAGRGVGLDVVRRALHEIQGEIVVDSELGKGTTFTFRLPLTLSITKALTCL
HERARLAFPMDSVEEMLDIPQQRLSMGPQGQLALDWHNQSLPVFPLSSLLNFYLPFGRTRYYNNLGDDGVVSIVILRNDN
EYLAVQTDQIEGEREIVIKQIEGPIAKPLGILGVTVRSDGQVMPIVDVLELFDIAYGRVRQRQTAPTPPSSDELNTATEP
MVLIVDDSITVRELLSMTFKKAGYIVEQARNGQEALEKLYSGLPCDLVFCDIEMPKMNGLELLERLQADPKLRRLPVAML
TSRGADRHRQIAAHLGARAYFSKPYLEEQLLEASARLRNGERLI

Nucleotide


Download         Length: 2775 bp        

>NTDB_id=844564 VZG88_RS02630 WP_208677660.1 521555..524329(+) (pilL-C) [Synechococcus elongatus IITB6]
ATGTCACCCACCAGTGATAATGTCCTGCGATCGCTGTTTCTCCGAGAAACGCGGGAGAATTTACAGCTTCTCAGCAACAC
TCTCAGCCAGCTCGAAGCAGGGCTCCCAGAAGCGACCACGTTGGCGGACGCATCGCGGGCGGCTCACTCGCTCAAGGGTG
CAGCGGCTTTGCTTAAGTTCGAAACCTTCCGACAGCTCGCAGCAGGTCTGGAATCTTGTCTATCGCTTCTCGCCGAGGCA
GAGCTACCGGACTACGCTGCCAGTCTGCCTCTGTTTCAGCAGACAACGACCCTGCTCGTGACCGCCACTGATCGGATCGA
GGCGGATGCTGATGATCTCGGCTTGCTGCCTGATGAAGGGCAGCACTTGGTCGAACAGTTGACCCGCCTGCAAGGAACGC
TGGAAACTGCTCTTCACACGCCTGTCGATCAGCAGGAAGTGGTTGAAAACACCCTTGAAGATTTACTCAGTCAAGACTTT
GAGCCTGTCTTGCCACCTGCCGATCCCAGTTTGGATGAGACGCTGGATGCCTTGCTCGGCGATCTCGAAGAACTCGGGAA
GCCTGCTGACTCCGACGACGATCGCCCACTGCTGGAAGAACTTAACTTTGACCTTGAAGACTGGATTGAGGCCAGTGAAG
AAGCATCGCAGGCAGCTGAAGTAGACGTTGCCGCCCAGCTCAAAGTTCTAGAAGCCGCGATCGCCGATCTGACACAACAG
TCCCAAGAGCAACCCCTGACGCTGGGGATCGATCCCGCCGTCTTGAGTGCTGTCATTCAAGCCCCCCCGCGGCTACCTGT
GACATTGACCCTAGAGCCCGTCGCCAAAGCCCGCAGCCAGGATCGAGGCCCTGTGGCCTTCGAGCAGACGTTGCGGGTCC
CCGTACGGCAATTGGATAACCTCAGTAACCTGGTTGGGGAAATCGTTGTCAGCCGGAATACCCTCGAAAGCGACCAATCC
CACCTGCGGGAAACCCTCGAGAACCTGATGCTGCAGGTGCATCAGCTAGGGGATCTGGGTGAGCGGATGCGGGAACTGTA
CGAGCGATCGCTGCTGGAAACCGCACTGGCGGCTCGCCGGCAACTGGTCGGAGCCCCTAGCGCCGTCGCAACGAGTAATC
TTTCCACCTTCCCCACTGATCAGTTCGACGATCTAGAACTCGATCGCTTCAGTGGTTTCCACTCCATCTCCCAAGAAATG
ATGGAGTTGCTGGTGCGGTTGCGCGAGGCGGCCTCAGACATTGACTTCATGGTCAATGAACCGTTTGACCAACTGACCCG
CAACTTCCAGCAAATTACTCTGCAACTGCAGAGCGAGCTGAACCAGACGCGCATGGTCCCCTTCTCGGACCTCACCGACC
AGCTCCCGCGTGCCGTTCGGGAGATTTCGCGCCGCTGCGGTAAAGGGGCTCACCTCGAGATTGAGGGGCAAGACATCTTG
ATCGACAAGATGATCCTGCAAAAACTGCAGGCGCCCATGACCCACTTGATTAACAACGCCCTCAGTCATGGCATTGAAAC
GGCAGAAGTGCGGCAATACCGCAATAAATCCCCGGAGGGAACGCTGGTAGTTCGGGCTTCGCTGCAGGGCAACCGGACCC
TGATTACCGTCAGTGACGACGGGGCAGGCATTGATGCGGAGCAGGTGAAGATCAAAGCTCTCTCACGGGGTCTGATTACC
CCAGAAGAAGCCGCAGGCATGCGCGTGCGGGAGATTTACGAACTCCTGTTCCGTCCGGGCTTTAGTACCCGCGACCAAGC
TGATGAGCTCGCTGGACGCGGGGTTGGCTTGGATGTAGTGCGGCGAGCGCTGCATGAAATTCAAGGCGAGATTGTGGTCG
ATTCGGAGCTGGGTAAAGGAACGACCTTTACCTTCCGACTACCCTTGACGCTCTCGATTACCAAAGCCTTGACCTGTCTA
CACGAGCGGGCACGGCTGGCCTTCCCGATGGACAGCGTCGAGGAGATGCTCGACATTCCTCAGCAACGCCTCTCGATGGG
GCCGCAAGGCCAACTAGCGTTGGACTGGCACAATCAATCGCTGCCAGTGTTTCCACTCTCATCACTGCTGAATTTCTACC
TGCCATTCGGGCGCACCCGCTACTACAACAATCTGGGTGATGACGGCGTGGTGTCGATTGTCATCCTGCGCAATGACAAC
GAGTACCTCGCCGTTCAGACCGATCAGATTGAGGGCGAGCGTGAAATTGTGATCAAGCAGATCGAAGGTCCGATCGCTAA
ACCCCTCGGCATTCTGGGGGTCACGGTTCGCTCCGACGGTCAGGTGATGCCAATTGTCGACGTCTTGGAACTGTTTGACA
TCGCCTACGGACGGGTGCGGCAGCGCCAGACGGCTCCAACGCCACCTAGCTCTGATGAACTCAACACCGCGACCGAACCC
ATGGTGCTGATTGTCGATGACTCGATCACCGTCCGCGAACTGCTGTCGATGACCTTCAAGAAGGCAGGCTACATCGTCGA
GCAGGCACGCAATGGTCAAGAAGCCCTCGAAAAACTCTATTCGGGGCTGCCCTGCGATCTGGTCTTCTGCGATATCGAGA
TGCCGAAGATGAATGGCCTAGAGCTCTTAGAGCGCCTGCAGGCGGACCCCAAACTGCGGCGGTTACCAGTGGCTATGCTG
ACATCGCGAGGTGCCGATCGCCATCGACAGATCGCGGCTCACTTGGGGGCACGGGCCTACTTCTCCAAGCCCTACCTCGA
GGAGCAACTGTTGGAGGCATCAGCACGCCTGAGAAACGGCGAACGGCTGATTTAG

Domains

Predicted by InterProScan.

Hpt domain (Hpt)

(9-95)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(492-630)

CheW-like domain (CheW)

(637-773)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(289-358)

Response regulator receiver domain (Response_reg)

(802-913)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

56.098

70.996

0.398