Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NSY31_RS14780 Genome accession   NZ_CP127834
Coordinates   3009769..3010413 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain Ag109     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3004769..3015413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSY31_RS14745 (NSY31_14745) - 3005954..3006385 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  NSY31_RS14750 (NSY31_14750) - 3006385..3006726 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  NSY31_RS14755 (NSY31_14755) - 3006719..3008200 (+) 1482 WP_098081703.1 Na+/H+ antiporter subunit D -
  NSY31_RS14760 (NSY31_14760) - 3008206..3008682 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  NSY31_RS14765 (NSY31_14765) - 3008682..3008966 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  NSY31_RS14770 (NSY31_14770) mnhG 3008950..3009324 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  NSY31_RS14775 (NSY31_14775) - 3009364..3009747 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  NSY31_RS14780 (NSY31_14780) comA 3009769..3010413 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  NSY31_RS14785 (NSY31_14785) comP 3010494..3012845 (-) 2352 WP_269775631.1 histidine kinase Regulator
  NSY31_RS14790 (NSY31_14790) comX 3012823..3012993 (-) 171 WP_015418105.1 competence pheromone ComX -
  NSY31_RS14795 (NSY31_14795) - 3012990..3013919 (-) 930 WP_231945405.1 polyprenyl synthetase family protein -
  NSY31_RS14800 (NSY31_14800) degQ 3014050..3014190 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  NSY31_RS14805 (NSY31_14805) - 3014655..3014996 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=844549 NSY31_RS14780 WP_003152052.1 3009769..3010413(-) (comA) [Bacillus velezensis strain Ag109]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=844549 NSY31_RS14780 WP_003152052.1 3009769..3010413(-) (comA) [Bacillus velezensis strain Ag109]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAGCAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACGTCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864