Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | VZH39_RS10730 | Genome accession | NZ_CP143862 |
| Coordinates | 2163991..2166465 (-) | Length | 824 a.a. |
| NCBI ID | WP_338429834.1 | Uniprot ID | - |
| Organism | Synechococcus elongatus IITB8 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2158991..2171465
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VZH39_RS10705 (VZH39_10705) | - | 2159512..2160801 (-) | 1290 | WP_338429831.1 | ATP-binding protein | - |
| VZH39_RS10710 (VZH39_10710) | - | 2160921..2162117 (+) | 1197 | WP_338431856.1 | M20 family metallopeptidase | - |
| VZH39_RS10715 (VZH39_10715) | - | 2162114..2162863 (-) | 750 | WP_338429832.1 | TIGR00297 family protein | - |
| VZH39_RS10720 (VZH39_10720) | - | 2162884..2163351 (+) | 468 | WP_338438819.1 | VOC family protein | - |
| VZH39_RS10725 (VZH39_10725) | - | 2163491..2163832 (+) | 342 | WP_208674641.1 | hypothetical protein | - |
| VZH39_RS10730 (VZH39_10730) | clpC | 2163991..2166465 (-) | 2475 | WP_338429834.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| VZH39_RS10735 (VZH39_10735) | rimI | 2166609..2167208 (-) | 600 | WP_338429835.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| VZH39_RS10740 (VZH39_10740) | lysA | 2167256..2168650 (+) | 1395 | WP_338429836.1 | diaminopimelate decarboxylase | - |
| VZH39_RS10745 (VZH39_10745) | cdaA | 2168730..2169650 (+) | 921 | WP_208674646.1 | diadenylate cyclase CdaA | - |
| VZH39_RS10750 (VZH39_10750) | - | 2169647..2170402 (+) | 756 | WP_208674648.1 | isoprenyl transferase | - |
| VZH39_RS10755 (VZH39_10755) | - | 2170415..2170690 (-) | 276 | WP_338429837.1 | DUF3143 domain-containing protein | - |
| VZH39_RS10760 (VZH39_10760) | - | 2170668..2171237 (-) | 570 | WP_338438820.1 | J domain-containing protein | - |
Sequence
Protein
Download Length: 824 a.a. Molecular weight: 91273.35 Da Isoelectric Point: 5.3220
>NTDB_id=844547 VZH39_RS10730 WP_338429834.1 2163991..2166465(-) (clpC) [Synechococcus elongatus IITB8]
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSSGGSQGRTKTP
TLDEFGSNLTQQAADGKLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIATGDIPDILEDKRVVT
LDIGLLVAGTKYRGEFEERLKKIMDEIRSAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR
KHIERDAALERRFQPVMVGEPSVDDTIEILRGLRERYEQHHKLKIADEALEAAAKLADRYISDRFLPDKAIDLIDEAGSR
VRLMNSQLPPAAKELDKELRQVLKDKDDAVRSQDFDKAGELRDREMEIKTQIRSIAQSKKADGTSSSDDSPIVTEEDIAH
IVASWTGVPVNKLTESESTKLLNMEETLHSRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAL
AAYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLLDEIEKAHPDVFNLLLQLLEDGR
LTDAKGRTVDFKNTLIILTSNIGSKVIEKGGGGLGFDFSGEDEAENQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQL
NKAEVKEIADIMLREVFGRMQEKGITLSVTEKFKDRLVEEGYNPSYGARPLRRAIMRLLEDSLAEEFLSGKLREGDTAVV
DIGEEGKVQVIAQEKRELLPQAVE
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGVAAKVLKSMGVNLKDARIEVEKIIGRGSGFVAVEIPF
TPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLGVDLSKVRTQVIRMLGETAEVSSGGSQGRTKTP
TLDEFGSNLTQQAADGKLDPVVGRQKEIERVIQILGRRTKNNPVLIGEPGVGKTAIAEGLAQRIATGDIPDILEDKRVVT
LDIGLLVAGTKYRGEFEERLKKIMDEIRSAGNVILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYR
KHIERDAALERRFQPVMVGEPSVDDTIEILRGLRERYEQHHKLKIADEALEAAAKLADRYISDRFLPDKAIDLIDEAGSR
VRLMNSQLPPAAKELDKELRQVLKDKDDAVRSQDFDKAGELRDREMEIKTQIRSIAQSKKADGTSSSDDSPIVTEEDIAH
IVASWTGVPVNKLTESESTKLLNMEETLHSRLIGQDEAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAL
AAYFFGSEEAMIRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLLDEIEKAHPDVFNLLLQLLEDGR
LTDAKGRTVDFKNTLIILTSNIGSKVIEKGGGGLGFDFSGEDEAENQYNRIRSLVNEELKQYFRPEFLNRLDEIIVFRQL
NKAEVKEIADIMLREVFGRMQEKGITLSVTEKFKDRLVEEGYNPSYGARPLRRAIMRLLEDSLAEEFLSGKLREGDTAVV
DIGEEGKVQVIAQEKRELLPQAVE
Nucleotide
Download Length: 2475 bp
>NTDB_id=844547 VZH39_RS10730 WP_338429834.1 2163991..2166465(-) (clpC) [Synechococcus elongatus IITB8]
ATGTTTGAACGCTTTACCGAAAAAGCCATTAAGGTCATCATGCTGGCTCAGGAGGAAGCGCGTCGCCTGGGTCACAACTT
CGTCGGCACCGAGCAGATTTTGCTAGGCCTCATCGGTGAAGGCACCGGCGTTGCCGCCAAAGTTCTGAAATCGATGGGCG
TCAACCTCAAGGACGCTCGTATCGAAGTTGAAAAAATTATCGGTCGTGGCTCGGGTTTTGTCGCTGTTGAGATTCCGTTT
ACGCCTCGCGCTAAGCGGGTGTTGGAACTCTCGCTAGAAGAAGCGCGGCAACTCGGTCACAACTACATTGGCACCGAGCA
CCTTCTGCTGGGCTTGATCCGTGAAGGCGAGGGCGTTGCCGCTCGCGTCCTCGAGAATTTGGGCGTCGATCTCTCGAAAG
TGCGGACACAAGTAATCCGCATGCTGGGTGAGACCGCAGAGGTTTCCAGTGGTGGTAGCCAAGGCCGGACGAAAACCCCA
ACCTTGGATGAATTCGGCTCGAACCTGACGCAGCAGGCTGCGGATGGGAAGCTCGATCCGGTGGTGGGTCGTCAGAAAGA
AATTGAGCGGGTGATCCAGATTCTGGGTCGCCGCACCAAGAACAACCCTGTGTTGATTGGCGAACCCGGCGTCGGTAAAA
CTGCGATCGCTGAAGGGTTAGCGCAGCGGATTGCCACTGGTGATATCCCGGACATTTTGGAAGATAAGCGCGTTGTCACC
CTTGATATCGGTCTGCTGGTAGCAGGCACGAAATATCGGGGTGAATTCGAAGAGCGCCTCAAGAAAATCATGGACGAGAT
CCGCTCGGCGGGGAACGTCATCTTGGTGATCGATGAAGTCCACACCTTGATCGGTGCAGGTGCGGCTGAAGGCGCAATCG
ATGCAGCTAACATCCTCAAGCCGGCACTGGCGCGGGGCGAGCTGCAGTGCATCGGTGCAACCACGCTGGATGAATACCGC
AAACATATCGAGCGTGATGCGGCCCTAGAACGTCGCTTCCAGCCAGTGATGGTGGGCGAGCCCAGCGTCGATGACACAAT
CGAAATTCTGCGCGGTTTGCGTGAGCGCTACGAGCAGCACCACAAGCTGAAAATTGCAGATGAGGCTCTAGAGGCTGCAG
CTAAGCTAGCCGATCGCTACATCAGCGATCGCTTCCTGCCCGATAAGGCAATCGACTTGATCGATGAAGCCGGTTCACGG
GTTCGCCTGATGAACTCGCAATTGCCGCCTGCTGCGAAGGAACTGGACAAGGAACTGCGTCAAGTCCTCAAGGACAAGGA
CGACGCCGTGCGTTCCCAAGACTTCGATAAAGCGGGTGAACTGCGCGATCGCGAGATGGAGATCAAAACCCAGATCCGCT
CGATCGCCCAAAGCAAGAAAGCCGATGGCACCAGCAGCAGTGATGATTCGCCGATCGTCACTGAGGAAGATATCGCGCAT
ATCGTCGCCTCTTGGACCGGCGTACCAGTCAACAAGCTGACCGAGTCGGAATCAACCAAATTGCTGAACATGGAGGAGAC
CCTCCACAGCCGCTTGATTGGTCAAGACGAAGCCGTGAAAGCTGTTTCACGAGCAATCCGTCGCGCCCGAGTTGGTCTCA
AGAACCCCAACCGTCCGATTGCCAGCTTCATCTTCAGCGGCCCGACCGGTGTTGGTAAAACCGAACTGACTAAAGCTTTG
GCGGCTTACTTCTTCGGCAGCGAAGAGGCGATGATCCGCCTTGACATGTCGGAGTACATGGAGCGCCATACCGTCAGCAA
GCTGATCGGTTCGCCTCCGGGCTATGTCGGCTATAACGAAGGCGGCCAGCTGACTGAAGCGGTTCGTCGTCGTCCCTACA
CCGTGGTCTTGCTGGACGAGATCGAGAAAGCTCACCCCGATGTCTTCAACCTGCTCTTGCAGTTACTGGAAGACGGTCGC
TTGACTGATGCCAAAGGTCGGACGGTGGACTTCAAGAACACCCTGATCATCCTGACCTCCAACATTGGCTCGAAGGTGAT
CGAGAAGGGTGGCGGCGGTCTAGGCTTTGACTTCTCGGGTGAGGATGAAGCTGAGAACCAATACAACCGCATTCGCTCCT
TGGTGAACGAAGAGCTGAAGCAATACTTCCGCCCTGAGTTCCTCAACCGCTTGGACGAAATCATCGTCTTCCGTCAGCTC
AACAAAGCGGAAGTCAAAGAAATTGCCGACATTATGTTGCGCGAGGTCTTTGGCCGGATGCAGGAAAAAGGCATCACCCT
GTCGGTCACTGAGAAGTTCAAAGACCGCTTGGTGGAAGAGGGCTACAACCCCAGCTACGGGGCACGTCCGCTTCGTCGGG
CGATCATGCGCTTGCTCGAAGATTCCTTGGCTGAGGAGTTCCTGTCTGGCAAGCTCCGCGAAGGCGACACCGCCGTCGTT
GATATTGGTGAGGAAGGCAAAGTGCAAGTAATTGCACAAGAGAAACGCGAACTCCTGCCCCAAGCAGTTGAGTAA
ATGTTTGAACGCTTTACCGAAAAAGCCATTAAGGTCATCATGCTGGCTCAGGAGGAAGCGCGTCGCCTGGGTCACAACTT
CGTCGGCACCGAGCAGATTTTGCTAGGCCTCATCGGTGAAGGCACCGGCGTTGCCGCCAAAGTTCTGAAATCGATGGGCG
TCAACCTCAAGGACGCTCGTATCGAAGTTGAAAAAATTATCGGTCGTGGCTCGGGTTTTGTCGCTGTTGAGATTCCGTTT
ACGCCTCGCGCTAAGCGGGTGTTGGAACTCTCGCTAGAAGAAGCGCGGCAACTCGGTCACAACTACATTGGCACCGAGCA
CCTTCTGCTGGGCTTGATCCGTGAAGGCGAGGGCGTTGCCGCTCGCGTCCTCGAGAATTTGGGCGTCGATCTCTCGAAAG
TGCGGACACAAGTAATCCGCATGCTGGGTGAGACCGCAGAGGTTTCCAGTGGTGGTAGCCAAGGCCGGACGAAAACCCCA
ACCTTGGATGAATTCGGCTCGAACCTGACGCAGCAGGCTGCGGATGGGAAGCTCGATCCGGTGGTGGGTCGTCAGAAAGA
AATTGAGCGGGTGATCCAGATTCTGGGTCGCCGCACCAAGAACAACCCTGTGTTGATTGGCGAACCCGGCGTCGGTAAAA
CTGCGATCGCTGAAGGGTTAGCGCAGCGGATTGCCACTGGTGATATCCCGGACATTTTGGAAGATAAGCGCGTTGTCACC
CTTGATATCGGTCTGCTGGTAGCAGGCACGAAATATCGGGGTGAATTCGAAGAGCGCCTCAAGAAAATCATGGACGAGAT
CCGCTCGGCGGGGAACGTCATCTTGGTGATCGATGAAGTCCACACCTTGATCGGTGCAGGTGCGGCTGAAGGCGCAATCG
ATGCAGCTAACATCCTCAAGCCGGCACTGGCGCGGGGCGAGCTGCAGTGCATCGGTGCAACCACGCTGGATGAATACCGC
AAACATATCGAGCGTGATGCGGCCCTAGAACGTCGCTTCCAGCCAGTGATGGTGGGCGAGCCCAGCGTCGATGACACAAT
CGAAATTCTGCGCGGTTTGCGTGAGCGCTACGAGCAGCACCACAAGCTGAAAATTGCAGATGAGGCTCTAGAGGCTGCAG
CTAAGCTAGCCGATCGCTACATCAGCGATCGCTTCCTGCCCGATAAGGCAATCGACTTGATCGATGAAGCCGGTTCACGG
GTTCGCCTGATGAACTCGCAATTGCCGCCTGCTGCGAAGGAACTGGACAAGGAACTGCGTCAAGTCCTCAAGGACAAGGA
CGACGCCGTGCGTTCCCAAGACTTCGATAAAGCGGGTGAACTGCGCGATCGCGAGATGGAGATCAAAACCCAGATCCGCT
CGATCGCCCAAAGCAAGAAAGCCGATGGCACCAGCAGCAGTGATGATTCGCCGATCGTCACTGAGGAAGATATCGCGCAT
ATCGTCGCCTCTTGGACCGGCGTACCAGTCAACAAGCTGACCGAGTCGGAATCAACCAAATTGCTGAACATGGAGGAGAC
CCTCCACAGCCGCTTGATTGGTCAAGACGAAGCCGTGAAAGCTGTTTCACGAGCAATCCGTCGCGCCCGAGTTGGTCTCA
AGAACCCCAACCGTCCGATTGCCAGCTTCATCTTCAGCGGCCCGACCGGTGTTGGTAAAACCGAACTGACTAAAGCTTTG
GCGGCTTACTTCTTCGGCAGCGAAGAGGCGATGATCCGCCTTGACATGTCGGAGTACATGGAGCGCCATACCGTCAGCAA
GCTGATCGGTTCGCCTCCGGGCTATGTCGGCTATAACGAAGGCGGCCAGCTGACTGAAGCGGTTCGTCGTCGTCCCTACA
CCGTGGTCTTGCTGGACGAGATCGAGAAAGCTCACCCCGATGTCTTCAACCTGCTCTTGCAGTTACTGGAAGACGGTCGC
TTGACTGATGCCAAAGGTCGGACGGTGGACTTCAAGAACACCCTGATCATCCTGACCTCCAACATTGGCTCGAAGGTGAT
CGAGAAGGGTGGCGGCGGTCTAGGCTTTGACTTCTCGGGTGAGGATGAAGCTGAGAACCAATACAACCGCATTCGCTCCT
TGGTGAACGAAGAGCTGAAGCAATACTTCCGCCCTGAGTTCCTCAACCGCTTGGACGAAATCATCGTCTTCCGTCAGCTC
AACAAAGCGGAAGTCAAAGAAATTGCCGACATTATGTTGCGCGAGGTCTTTGGCCGGATGCAGGAAAAAGGCATCACCCT
GTCGGTCACTGAGAAGTTCAAAGACCGCTTGGTGGAAGAGGGCTACAACCCCAGCTACGGGGCACGTCCGCTTCGTCGGG
CGATCATGCGCTTGCTCGAAGATTCCTTGGCTGAGGAGTTCCTGTCTGGCAAGCTCCGCGAAGGCGACACCGCCGTCGTT
GATATTGGTGAGGAAGGCAAAGTGCAAGTAATTGCACAAGAGAAACGCGAACTCCTGCCCCAAGCAGTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
62.192 |
98.544 |
0.613 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.27 |
100 |
0.445 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
55.226 |
77.791 |
0.43 |
| clpC | Streptococcus mutans UA159 |
42.036 |
100 |
0.426 |
| clpE | Streptococcus mutans UA159 |
52.941 |
80.461 |
0.426 |
| clpE | Streptococcus pneumoniae D39 |
51.335 |
81.796 |
0.42 |
| clpE | Streptococcus pneumoniae R6 |
51.335 |
81.796 |
0.42 |
| clpE | Streptococcus pneumoniae Rx1 |
51.335 |
81.796 |
0.42 |
| clpC | Streptococcus pneumoniae Rx1 |
45.276 |
92.476 |
0.419 |
| clpC | Streptococcus pneumoniae D39 |
45.276 |
92.476 |
0.419 |
| clpE | Streptococcus pneumoniae TIGR4 |
51.187 |
81.796 |
0.419 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.37 |
91.748 |
0.416 |
| clpC | Streptococcus thermophilus LMD-9 |
41.255 |
100 |
0.415 |
| clpC | Streptococcus thermophilus LMG 18311 |
41.134 |
100 |
0.414 |