Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   VZH39_RS05095 Genome accession   NZ_CP143862
Coordinates   1057946..1060957 (-) Length   1003 a.a.
NCBI ID   WP_338431446.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1052946..1065957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH39_RS05075 (VZH39_05075) - 1053822..1054253 (-) 432 WP_208679033.1 hypothetical protein -
  VZH39_RS05080 (VZH39_05080) - 1054417..1055127 (-) 711 WP_208672632.1 PHP domain-containing protein -
  VZH39_RS05085 (VZH39_05085) - 1055806..1056624 (-) 819 WP_338431443.1 D-hexose-6-phosphate mutarotase -
  VZH39_RS05090 (VZH39_05090) pilT 1056665..1057780 (-) 1116 WP_338431444.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  VZH39_RS05095 (VZH39_05095) uvrA 1057946..1060957 (-) 3012 WP_338431446.1 excinuclease ABC subunit UvrA Machinery gene
  VZH39_RS05100 (VZH39_05100) - 1061084..1061245 (+) 162 WP_208672638.1 hypothetical protein -
  VZH39_RS05105 (VZH39_05105) - 1061319..1061897 (-) 579 WP_338431448.1 GAF domain-containing protein -
  VZH39_RS05110 (VZH39_05110) - 1062114..1062332 (+) 219 WP_208672641.1 chlorophyll a/b-binding protein -
  VZH39_RS05115 (VZH39_05115) - 1062517..1062861 (+) 345 WP_338431450.1 hypothetical protein -
  VZH39_RS05120 (VZH39_05120) hisIE 1062917..1063552 (+) 636 WP_338431451.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE -
  VZH39_RS05125 (VZH39_05125) mtnC 1063563..1064279 (-) 717 WP_338431452.1 acireductone synthase -
  VZH39_RS05130 (VZH39_05130) mtnB 1064288..1064908 (-) 621 WP_338431454.1 methylthioribulose 1-phosphate dehydratase -

Sequence

Protein


Download         Length: 1003 a.a.        Molecular weight: 109730.66 Da        Isoelectric Point: 6.7802

>NTDB_id=844524 VZH39_RS05095 WP_338431446.1 1057946..1060957(-) (uvrA) [Synechococcus elongatus IITB8]
MPKRASVEPSSDLAHRNGSQPAAETDQIRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVES
LSAYARQFLGQVDKPDVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAGSPHCPHCDRSIAPQTIDQMV
DRLAELPDRSRFQILAPVVRGKKGTHKKLLSSLAAEGFVRVRINGEVRELSDSIELDKNHAHTIEIVVDRLVQKEGIQER
LVDSLTTCLRRAEGIAVIDVLPSDRGSVVTLPTELAASHAAETKAAYGSPASGYELVFSENFACPEHGAVMEELSPRLFS
FNSPYGACSHCHGLGSLRTFSPDLVVPDPSLPVYAAIAPWSEKDHSYYFNLLCGVAEASGFEISDRWQDLTPDQQQAILY
GSREAIAVEAESRFRDRQVYHRPFEGVIPILERQYRETSSEVYKQKLEKYLVDQTCEVCHGLRLKPESLAVRIGPYRITD
LTSVSVRDCLSKIEALIGADGRSPLLTARQMQIGDLVLREIQARLRFLLDVGLDYLTLDRPAMTLSGGEAQRIRLATQIG
AGLTGVLYVLDEPSIGLHQRDNDRLLNTLIRLRDLGNTLIVVEHDEDTIRAADHLVDIGPGAGVHGGRIVAQGNLKQLLT
AEDSLTGAYLSGRRRIATPASRREGNGRRLQLQGANRNNLQNLDVEIPLGKLVCVTGVSGSGKSTLVNELLHPALEHSLG
LKVPFPKGLAALKGTKAIDKVIVIDQSPIGRTPRSNPATYTGAFDPIRQVFAATTEAKARGYQPGQFSFNVKGGRCEACG
GQGVNVIEMNFLPDVYVQCDVCKGARYNRETLQVKYKGKTIADVLNMTVEEAAQFFENIPQASSRLQTLVDVGLGYVRLG
QPAPTLSGGEAQRVKLATELARRATGKTLYLIDEPTTGLSFYDVHKLLDVMQRLVDKGNSIVVIEHNLDVIRCADWIIDL
GPEGGDRGGEIVVCGEPETVAMHAHSHTGRYLAQVLAQHPPGQ

Nucleotide


Download         Length: 3012 bp        

>NTDB_id=844524 VZH39_RS05095 WP_338431446.1 1057946..1060957(-) (uvrA) [Synechococcus elongatus IITB8]
ATGCCCAAGCGCGCTTCTGTTGAGCCTTCCTCTGATCTGGCTCATCGCAATGGCAGTCAACCAGCAGCCGAGACGGACCA
AATCCGAGTTCGGGGCGCGCGGCAACATAATCTGCAGAACCTGGACCTCGATCTACCGCGCAACCAGCTAATTGTGTTTA
CGGGTGTGAGCGGTTCGGGCAAGTCATCCCTGGCCTTTGACACGATTTTTGCCGAGGGGCAACGCCGCTACGTCGAGTCG
CTGTCTGCTTATGCTCGGCAGTTCCTTGGCCAAGTTGATAAGCCCGATGTCGATGCGATTGAGGGCTTGAGCCCAGCTAT
TTCCATTGACCAAAAGTCCACTTCGCACAACCCACGATCGACGGTCGGTACAGTCACGGAAATCTACGATTACCTGCGGT
TGTTGTTTGGGCGAGCCGGCTCACCCCACTGTCCCCATTGCGATCGCTCGATCGCGCCTCAAACGATTGATCAAATGGTC
GATCGCCTTGCAGAACTACCAGATCGCAGCCGCTTCCAAATCTTGGCCCCGGTGGTTCGCGGTAAGAAAGGAACCCATAA
AAAACTGCTTTCTAGTCTTGCGGCAGAAGGCTTTGTGCGGGTGCGGATCAACGGCGAAGTGCGGGAACTCAGTGACAGCA
TTGAGCTGGATAAAAACCACGCCCACACCATCGAAATTGTGGTCGATCGCCTTGTTCAAAAAGAGGGAATTCAAGAGCGA
CTCGTTGATTCACTCACCACCTGTCTTCGTCGTGCCGAAGGCATTGCTGTGATCGATGTCTTGCCGAGCGATCGCGGCTC
AGTCGTAACCTTGCCGACGGAGTTAGCAGCTAGCCACGCAGCCGAAACAAAAGCTGCCTATGGCAGCCCTGCCAGTGGCT
ATGAACTTGTCTTTTCCGAAAATTTTGCTTGCCCCGAGCATGGCGCTGTGATGGAAGAACTGTCGCCGCGCCTCTTTTCC
TTTAACTCACCCTACGGTGCCTGCTCCCATTGCCACGGGCTGGGGAGCCTACGGACGTTTTCGCCCGATCTGGTCGTTCC
CGATCCCAGCCTGCCGGTCTATGCCGCGATCGCGCCTTGGTCGGAAAAAGATCACAGCTACTACTTCAACCTGCTCTGCG
GCGTGGCCGAGGCCAGTGGCTTCGAAATCAGCGATCGCTGGCAGGATTTGACCCCTGATCAACAGCAGGCGATTCTCTAC
GGCAGCCGTGAAGCGATCGCGGTTGAAGCCGAATCCCGCTTCCGCGATCGTCAGGTTTACCATCGCCCCTTTGAGGGGGT
GATTCCGATCCTGGAGCGTCAGTACCGAGAAACCAGTTCCGAAGTCTATAAACAGAAGCTCGAAAAATATCTCGTCGATC
AAACTTGTGAGGTCTGTCACGGTTTACGGCTCAAACCGGAATCCTTGGCGGTGCGGATTGGCCCCTATCGGATCACTGAT
CTCACCAGTGTTTCAGTACGGGACTGCCTGAGCAAAATTGAAGCTTTAATCGGTGCTGACGGGCGATCGCCCCTCTTGAC
AGCTCGCCAAATGCAGATCGGGGATTTGGTGCTGCGCGAAATTCAGGCTCGCCTGCGCTTCTTGCTCGACGTGGGACTCG
ACTACCTGACCCTCGATCGCCCGGCCATGACTCTCTCGGGTGGTGAGGCCCAGCGTATTCGCCTGGCTACACAAATTGGG
GCGGGTCTGACCGGAGTGCTCTACGTCTTGGATGAGCCCAGTATTGGGCTGCATCAACGTGATAACGATCGCCTACTCAA
TACCCTGATCCGCCTGCGGGATCTTGGCAATACCCTGATTGTGGTTGAGCACGACGAAGATACGATTCGTGCAGCCGACC
ACCTGGTTGATATTGGCCCTGGAGCAGGTGTGCATGGGGGGCGTATCGTTGCCCAAGGCAATTTAAAGCAACTGCTGACG
GCTGAAGACTCGTTGACGGGTGCTTATCTCTCAGGCCGTCGCCGTATTGCCACTCCAGCGAGCCGTCGTGAGGGTAATGG
TCGCCGTCTGCAGCTCCAAGGCGCCAATCGTAACAATCTCCAAAACCTTGATGTTGAGATTCCCCTCGGCAAACTGGTCT
GTGTCACGGGTGTGAGTGGCTCCGGCAAATCCACGCTTGTCAATGAACTCTTACATCCAGCCCTCGAGCATAGTCTGGGA
CTAAAGGTTCCTTTTCCCAAAGGCCTAGCCGCGCTGAAAGGCACAAAAGCGATCGACAAGGTGATTGTGATTGATCAATC
GCCGATTGGTCGCACCCCACGATCGAATCCGGCGACATATACCGGTGCCTTTGATCCGATTCGGCAGGTGTTTGCTGCAA
CGACGGAAGCGAAAGCACGAGGCTATCAGCCGGGGCAGTTTTCCTTCAATGTCAAAGGTGGCCGCTGTGAAGCCTGTGGT
GGGCAAGGCGTCAATGTCATTGAGATGAATTTTCTGCCCGATGTCTATGTCCAGTGCGATGTCTGCAAAGGTGCTCGCTA
TAACCGTGAAACGCTGCAGGTGAAGTACAAAGGTAAGACGATCGCTGACGTGCTCAACATGACCGTCGAAGAAGCGGCGC
AGTTTTTCGAAAACATTCCTCAAGCCAGTAGCCGCCTGCAGACCTTGGTGGATGTGGGTCTGGGTTATGTGCGTCTCGGC
CAGCCGGCGCCAACACTCTCAGGTGGTGAAGCCCAACGGGTCAAACTGGCGACGGAACTGGCGCGTCGGGCAACCGGCAA
AACGCTCTATCTGATTGATGAACCGACCACGGGTCTCTCTTTCTACGATGTCCACAAGTTGCTGGATGTGATGCAGCGCC
TCGTGGATAAGGGCAATTCGATCGTGGTGATTGAGCACAACTTGGATGTGATTCGCTGTGCAGACTGGATCATTGATCTC
GGGCCAGAAGGGGGCGATCGCGGCGGCGAGATTGTTGTTTGCGGGGAGCCAGAGACTGTAGCAATGCATGCTCACTCCCA
CACAGGGCGCTATCTTGCTCAAGTCTTAGCCCAGCATCCTCCGGGGCAGTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(342-449)

UvrA interaction domain (UvrA_inter)

(154-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

54.115

96.909

0.524
  uvrA Streptococcus pneumoniae TIGR4

54.115

96.909

0.524
  uvrA Streptococcus pneumoniae D39

54.115

96.909

0.524