Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VZH39_RS02530 Genome accession   NZ_CP143862
Coordinates   537323..537694 (-) Length   123 a.a.
NCBI ID   WP_208677541.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB8     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 532323..542694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH39_RS02500 (VZH39_02500) - 532377..533414 (+) 1038 WP_338430846.1 acyl-CoA dehydrogenase family protein -
  VZH39_RS02505 (VZH39_02505) kaiC 533411..534970 (-) 1560 WP_208677543.1 circadian clock protein KaiC -
  VZH39_RS02510 (VZH39_02510) kaiB 535022..535330 (-) 309 WP_208677542.1 circadian clock protein KaiB -
  VZH39_RS02515 (VZH39_02515) - 535420..536274 (-) 855 WP_208673134.1 circadian clock protein KaiA -
  VZH39_RS02520 (VZH39_02520) rplU 536511..536894 (+) 384 WP_208673136.1 50S ribosomal protein L21 -
  VZH39_RS02525 (VZH39_02525) rpmA 536929..537195 (+) 267 WP_208673138.1 50S ribosomal protein L27 -
  VZH39_RS02530 (VZH39_02530) pilH 537323..537694 (-) 372 WP_208677541.1 response regulator Machinery gene
  VZH39_RS02535 (VZH39_02535) truB 537784..538668 (+) 885 WP_208673142.1 tRNA pseudouridine(55) synthase TruB -
  VZH39_RS02540 (VZH39_02540) aspS 538712..540511 (-) 1800 WP_338430849.1 aspartate--tRNA ligase -
  VZH39_RS02545 (VZH39_02545) - 540692..542494 (+) 1803 WP_338430851.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13495.44 Da        Isoelectric Point: 4.4829

>NTDB_id=844516 VZH39_RS02530 WP_208677541.1 537323..537694(-) (pilH) [Synechococcus elongatus IITB8]
MANILVVDDSSLYLELARQALAEHGHHVTLANNGQEALQTIAQQKPDLILLDIVMPEMNGYDVLRSLKKSPDTASIPVIL
CSTKGEDFDKYWGLKQGATAYLTKPYEVNDLLVLVQEQISAAG

Nucleotide


Download         Length: 372 bp        

>NTDB_id=844516 VZH39_RS02530 WP_208677541.1 537323..537694(-) (pilH) [Synechococcus elongatus IITB8]
ATGGCCAATATCCTCGTTGTTGACGACAGCAGTCTCTATTTAGAACTGGCGCGTCAAGCGCTAGCTGAACATGGCCATCA
CGTGACTCTTGCCAACAATGGTCAGGAAGCTTTACAAACCATTGCCCAGCAAAAGCCAGACCTGATCTTGCTCGACATTG
TGATGCCGGAAATGAATGGCTACGATGTCTTGCGATCACTCAAGAAATCGCCGGACACAGCCAGCATTCCCGTCATCCTT
TGTTCCACGAAGGGCGAAGACTTTGATAAGTATTGGGGCCTAAAGCAGGGCGCGACTGCTTACTTAACCAAGCCCTATGA
GGTCAACGATCTGCTGGTTTTGGTACAGGAACAAATTAGCGCTGCAGGTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

47.009

95.122

0.447