Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   VZH09_RS06895 Genome accession   NZ_CP143859
Coordinates   1436484..1437683 (-) Length   399 a.a.
NCBI ID   WP_208678815.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB7     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431484..1442683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH09_RS06865 (VZH09_06865) - 1431930..1432253 (+) 324 WP_208676183.1 phasin family protein -
  VZH09_RS06870 (VZH09_06870) - 1432308..1432832 (+) 525 WP_208676181.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  VZH09_RS06875 (VZH09_06875) lipB 1432905..1433642 (-) 738 WP_338463024.1 lipoyl(octanoyl) transferase LipB -
  VZH09_RS06880 (VZH09_06880) raiA 1433848..1434471 (+) 624 WP_208676179.1 ribosome-associated translation inhibitor RaiA -
  VZH09_RS06885 (VZH09_06885) larC 1434528..1435736 (-) 1209 WP_338460926.1 nickel pincer cofactor biosynthesis protein LarC -
  VZH09_RS06890 (VZH09_06890) - 1435752..1436453 (+) 702 WP_338429264.1 L-threonylcarbamoyladenylate synthase -
  VZH09_RS06895 (VZH09_06895) pilT 1436484..1437683 (-) 1200 WP_208678815.1 type IV pilus twitching motility protein PilT Machinery gene
  VZH09_RS06900 (VZH09_06900) queA 1437758..1438837 (-) 1080 WP_338460927.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  VZH09_RS06905 (VZH09_06905) - 1438976..1439932 (+) 957 WP_338460929.1 cupin -
  VZH09_RS06910 (VZH09_06910) - 1439929..1440729 (-) 801 WP_338460930.1 TIGR01548 family HAD-type hydrolase -
  VZH09_RS06915 (VZH09_06915) - 1441151..1441489 (+) 339 WP_208676167.1 30S ribosomal protein PSRP-3 -
  VZH09_RS06920 (VZH09_06920) - 1441617..1442558 (-) 942 WP_338460931.1 HEAT repeat domain-containing protein -

Sequence

Protein


Download         Length: 399 a.a.        Molecular weight: 44004.43 Da        Isoelectric Point: 5.4979

>NTDB_id=844484 VZH09_RS06895 WP_208678815.1 1436484..1437683(-) (pilT) [Synechococcus elongatus IITB7]
MTDASRLPLPPPPPPFGGGGASAVPAPKPNPMPAPAPAASPQPAASKQPSLAEIVRQAYEHDYSDVHVGVGEVPRFRDRG
EIVQTTYPVTDTATFNAWLREVLTEEQVREFEQGLDFDGATQYDFARVRINIFGSLRGPSMVLRLIPLRILSLDELSLPP
VFRDICYYPKGLVLVTGPTGSGKSTTLAAMIDFINQEMAKNIITIEDPIEFVHQSQRSLIKQREVGVHTLKFEAALRASL
REDPDIILVGELRDRETINTALKAAQTGHLVMATLHTNSAVKTIERVLNMFEPAEQPPVRVALAESLVAIIAQGLCRTIQ
GKRAAYHEILINTDAIKDYIIRGELEEVEQLIPKCTFDGMCTSNQSLFRLFNEGRISEETALSQSSKPNEMSQMLRGRV

Nucleotide


Download         Length: 1200 bp        

>NTDB_id=844484 VZH09_RS06895 WP_208678815.1 1436484..1437683(-) (pilT) [Synechococcus elongatus IITB7]
ATGACTGATGCCTCGCGCCTACCGCTACCCCCGCCACCCCCTCCTTTTGGGGGGGGTGGAGCCTCAGCGGTTCCTGCACC
GAAGCCAAACCCTATGCCTGCGCCTGCCCCAGCCGCATCTCCTCAGCCTGCGGCCAGTAAGCAGCCGAGCTTGGCAGAAA
TTGTCCGACAAGCCTACGAGCACGACTACTCGGATGTGCACGTGGGGGTTGGAGAAGTACCGCGCTTCCGCGATCGCGGC
GAGATTGTACAAACGACCTATCCGGTTACGGATACCGCCACGTTTAATGCTTGGCTGCGCGAAGTACTGACGGAAGAACA
GGTGCGCGAGTTTGAGCAGGGCTTGGACTTCGACGGCGCAACCCAATACGACTTTGCGCGGGTTCGGATCAATATCTTTG
GGTCGCTGCGGGGCCCTTCCATGGTGTTGCGGCTAATTCCGCTGCGCATTCTCAGCCTCGATGAGTTGAGCCTCCCGCCG
GTCTTCCGCGATATTTGCTACTACCCCAAAGGACTGGTGCTCGTCACGGGTCCTACGGGATCGGGGAAATCAACGACTCT
CGCCGCCATGATTGACTTCATCAATCAGGAAATGGCGAAAAATATCATCACGATTGAGGATCCCATCGAGTTTGTTCACC
AGAGCCAGCGATCGCTGATTAAGCAACGCGAAGTCGGTGTCCATACGCTGAAGTTTGAGGCGGCTTTGCGAGCTTCGTTG
CGGGAAGACCCTGACATTATCCTCGTTGGTGAGTTGCGCGATCGCGAAACAATTAATACGGCACTCAAAGCGGCTCAAAC
GGGCCATTTGGTGATGGCAACCCTGCACACCAACAGTGCTGTTAAAACGATTGAGCGAGTGCTCAACATGTTTGAACCCG
CTGAGCAGCCACCTGTGCGGGTTGCTCTTGCTGAATCTCTGGTGGCGATTATTGCTCAAGGACTCTGCCGCACTATTCAA
GGCAAACGAGCTGCCTATCACGAGATTTTAATCAATACGGATGCCATTAAGGACTACATCATTCGCGGTGAACTGGAAGA
GGTGGAGCAGCTAATTCCCAAATGTACTTTTGACGGGATGTGCACTAGTAACCAGTCTCTCTTCCGACTCTTTAATGAAG
GCAGAATTAGTGAGGAGACGGCGCTCTCGCAATCGAGTAAGCCCAATGAAATGTCGCAGATGCTGCGGGGGCGCGTTTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(54-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baylyi ADP1

46.018

84.962

0.391
  pilT Acinetobacter nosocomialis M2

45.133

84.962

0.383
  pilT Acinetobacter baumannii D1279779

45.133

84.962

0.383
  pilT Acinetobacter baumannii strain A118

45.133

84.962

0.383
  pilT Neisseria meningitidis 8013

45.619

82.957

0.378
  pilT Legionella pneumophila strain ERS1305867

45.181

83.208

0.376
  pilT Legionella pneumophila strain Lp02

45.181

83.208

0.376
  pilT Pseudomonas stutzeri DSM 10701

44.248

84.962

0.376
  pilT Neisseria gonorrhoeae MS11

45.317

82.957

0.376
  pilT Pseudomonas aeruginosa PAK

43.953

84.962

0.373
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

43.881

83.96

0.368
  pilT Vibrio cholerae strain A1552

43.881

83.96

0.368