Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QLQ02_RS20395 Genome accession   NZ_CP127833
Coordinates   3934035..3934313 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus mojavensis strain KRS009     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3929035..3939313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS20375 ade 3929088..3930821 (-) 1734 WP_286058591.1 adenine deaminase -
  QLQ02_RS20380 ktrC 3930978..3931643 (-) 666 WP_010334094.1 Ktr system potassium transporter KtrC -
  QLQ02_RS20385 - 3931715..3932545 (-) 831 WP_286058592.1 gamma-glutamylcyclotransferase -
  QLQ02_RS20390 - 3932561..3933847 (-) 1287 WP_286058593.1 ATP-binding protein -
  QLQ02_RS20395 abrB 3934035..3934313 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  QLQ02_RS20400 mreBH 3934595..3935602 (+) 1008 WP_168747680.1 cell shape-determining protein MreBH -
  QLQ02_RS20405 - 3935705..3935836 (+) 132 WP_010334091.1 protein YkpC -
  QLQ02_RS20410 - 3935950..3937182 (+) 1233 WP_010334090.1 aminopeptidase -
  QLQ02_RS20415 - 3937210..3938121 (-) 912 WP_286058594.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=844482 QLQ02_RS20395 WP_003244728.1 3934035..3934313(-) (abrB) [Bacillus mojavensis strain KRS009]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=844482 QLQ02_RS20395 WP_003244728.1 3934035..3934313(-) (abrB) [Bacillus mojavensis strain KRS009]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATCGAGTTAAGACGGGCACTGGA
TATTGCTATTAAAGACAGCATTGAGTTTTTTGTCGACGGTGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGGGAAATCACTTCAGAAAATAAAGAATACGGCAATGGTAAAATTACGTTAAGCCCTGAAGGTGCACAG
CTGCTTCTCGAAGAAATCCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576