Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QLQ02_RS15785 Genome accession   NZ_CP127833
Coordinates   3058694..3059461 (+) Length   255 a.a.
NCBI ID   WP_010334977.1    Uniprot ID   -
Organism   Bacillus mojavensis strain KRS009     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3053694..3064461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS15755 pgpH 3053990..3056125 (+) 2136 WP_081720840.1 cyclic-di-AMP phosphodiesterase PgpH -
  QLQ02_RS15760 ybeY 3056126..3056599 (+) 474 WP_010334982.1 rRNA maturation RNase YbeY -
  QLQ02_RS15765 - 3056580..3056951 (+) 372 WP_026014745.1 diacylglycerol kinase family protein -
  QLQ02_RS15770 - 3057072..3057482 (+) 411 WP_010334980.1 cytidine deaminase -
  QLQ02_RS15775 era 3057463..3058368 (+) 906 WP_010334979.1 GTPase Era -
  QLQ02_RS15780 - 3058514..3058657 (+) 144 WP_024122087.1 YqzL family protein -
  QLQ02_RS15785 recO 3058694..3059461 (+) 768 WP_010334977.1 DNA repair protein RecO Machinery gene
  QLQ02_RS15790 glyQ 3059758..3060645 (+) 888 WP_010334976.1 glycine--tRNA ligase subunit alpha -
  QLQ02_RS15795 glyS 3060638..3062677 (+) 2040 WP_286058308.1 glycine--tRNA ligase subunit beta -
  QLQ02_RS15800 ccpN 3062812..3063450 (+) 639 WP_024122084.1 transcriptional regulator CcpN -
  QLQ02_RS15805 - 3063476..3064288 (+) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29319.99 Da        Isoelectric Point: 8.0295

>NTDB_id=844465 QLQ02_RS15785 WP_010334977.1 3058694..3059461(+) (recO) [Bacillus mojavensis strain KRS009]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKDEVKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=844465 QLQ02_RS15785 WP_010334977.1 3058694..3059461(+) (recO) [Bacillus mojavensis strain KRS009]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATAGTTACTTTACTGACAAG
AGAGCACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATTCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCCGAGCTTGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGATGAAGGAACAGACCCGGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
ACCGCAAACGGCAAGGCTATTGAGATTGTTTTATTACTTTGATCTTTCAAGGATTGGCAATGTGTCCTTAAAGCAGGAAA
CGAAAGATGAAGTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGAGTTTATCTGAAATCGAAGCGCTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.118

100

0.941