Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   VZH09_RS02465 Genome accession   NZ_CP143859
Coordinates   517768..520542 (+) Length   924 a.a.
NCBI ID   WP_338462354.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512768..525542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH09_RS02440 (VZH09_02440) - 513005..513619 (-) 615 WP_208672881.1 hypothetical protein -
  VZH09_RS02445 (VZH09_02445) - 513740..514504 (+) 765 WP_338462351.1 YebC/PmpR family DNA-binding transcriptional regulator -
  VZH09_RS02450 (VZH09_02450) - 514528..514704 (+) 177 WP_208672878.1 hypothetical protein -
  VZH09_RS02455 (VZH09_02455) - 514753..515235 (+) 483 WP_208672876.1 chemotaxis protein CheW -
  VZH09_RS02460 (VZH09_02460) - 515255..517765 (+) 2511 WP_338462353.1 methyl-accepting chemotaxis protein -
  VZH09_RS02465 (VZH09_02465) pilL-C 517768..520542 (+) 2775 WP_338462354.1 hybrid sensor histidine kinase/response regulator Machinery gene
  VZH09_RS02470 (VZH09_02470) - 520546..520782 (+) 237 WP_208677661.1 hypothetical protein -
  VZH09_RS02475 (VZH09_02475) - 521069..522445 (+) 1377 WP_338462355.1 glycosyltransferase family 2 protein -
  VZH09_RS02480 (VZH09_02480) - 522576..523643 (+) 1068 WP_338462356.1 Mrp/NBP35 family ATP-binding protein -
  VZH09_RS02485 (VZH09_02485) rodA 523693..524958 (+) 1266 WP_338462357.1 rod shape-determining protein RodA -

Sequence

Protein


Download         Length: 924 a.a.        Molecular weight: 102461.31 Da        Isoelectric Point: 4.3741

>NTDB_id=844465 VZH09_RS02465 WP_338462354.1 517768..520542(+) (pilL-C) [Synechococcus elongatus IITB7]
MSPTSDNVLRSLFLRETRENLQLLSNTLSQLEAGLPEATTLADASRAAHSLKGAAALLKFETFRQLAAGLESCLSLLAEA
ELPDYAASLPLFQQTTTLLVTATDRIEADADDLGLLPDEGQHLVEQLTRLQGTLETALHTPVDQQEVVENTLEDLLSQDF
EPVLPPADPSLDETLDALLGDLEELGKPADSDDDRPPLEELNFDLEDWIEASEEASQAAEVDVAAQLKVLEAAIADLTQQ
SQEQPLTLGIDPAVLSAVIQAPPRLPVTLTLEPVTKARSQDRGPVAFEQTLRVPVRQLDNLSNLVGEIVVSRNTLESDQS
HLRETLENLMLQVHQLGDLGERMRELYERSLLETALAARRQLVGAPSAAATSNLSTFPTDQFDDLELDRFSGFHSISQEM
MELLVRLREAASDIDFMVNEPFDQLTRNFQQITLQLQSELNQTRMVPFSDLTDQLPRAVREISRRCGKGAHLEIEGQDIL
IDKMILQKLQAPMTHLINNALSHGIETAEVRQYRNKSPEGTLVVRASLQGNRTLITVSDDGAGIDAEQVKIKALSRGLIT
PEEAAGMRVREIYELLFRPGFSTRDQADELAGRGVGLDVVRRALHEIQGEIVVDSELGKGTTFTFRLPLTLSITKALTCL
HERARLAFPMDSVEEMLDIPQQRLSMGPQGQLALDWHNQSLPVFPLSSLLNFYLPFGRTRYYNNLGDDGVVSIVILRNDN
EYLAVQTDQIEGEREIVIKQIEGPIAKPLGILGVTVRSDGQVMPIVDVLELFDIAYGRVRQRQTAPTPPSSDELNTATEP
MVLIVDDSITVRELLSMTFKKAGYIVEQARNGQEALEKLYSGLPCDLVFCDIEMPKMNGLELLERLQADPKLRRLPVAML
TSRGADRHRQIAAHLGARAYFSKPYLEEQLLEASARLRNGERLI

Nucleotide


Download         Length: 2775 bp        

>NTDB_id=844465 VZH09_RS02465 WP_338462354.1 517768..520542(+) (pilL-C) [Synechococcus elongatus IITB7]
ATGTCACCCACCAGTGATAATGTCCTGCGATCGCTGTTTCTCCGAGAAACGCGGGAGAATTTACAGCTTCTCAGCAACAC
TCTCAGCCAGCTCGAAGCAGGGCTCCCAGAAGCGACCACGTTGGCGGACGCATCGCGGGCGGCTCACTCGCTCAAGGGTG
CAGCGGCTTTGCTTAAGTTCGAAACCTTCCGACAGCTCGCAGCAGGTCTGGAATCTTGTCTATCGCTTCTCGCCGAGGCA
GAGCTACCGGACTACGCTGCCAGTCTGCCTCTGTTTCAGCAGACAACGACCCTGCTCGTGACCGCCACTGATCGGATCGA
GGCGGACGCTGATGATCTCGGCTTGCTGCCTGATGAAGGGCAGCACTTGGTCGAACAGTTGACCCGGCTGCAAGGAACGC
TGGAAACCGCTCTTCACACGCCTGTCGATCAGCAGGAAGTGGTTGAAAACACCCTTGAAGATTTACTCAGTCAAGACTTT
GAGCCTGTCTTGCCACCTGCCGATCCCAGTTTGGATGAGACGCTGGATGCCTTGCTCGGCGATCTCGAAGAACTCGGGAA
GCCTGCTGACTCCGACGACGATCGCCCACCGCTGGAAGAACTTAACTTTGACCTTGAAGACTGGATTGAGGCCAGTGAAG
AAGCATCGCAGGCAGCTGAAGTAGACGTTGCCGCCCAGCTCAAAGTTCTAGAAGCCGCGATCGCTGATCTGACACAACAG
TCCCAAGAGCAACCCCTGACGCTGGGGATCGATCCCGCCGTCTTGAGTGCTGTCATTCAAGCCCCACCGCGGCTACCTGT
GACGTTGACCCTAGAGCCCGTCACCAAAGCCCGCAGCCAGGATCGAGGCCCTGTGGCCTTCGAGCAGACGTTGCGGGTCC
CCGTACGGCAATTGGATAACCTCAGTAACCTGGTTGGGGAAATCGTTGTCAGCCGGAATACCCTCGAAAGCGACCAATCC
CACCTGCGGGAAACCCTCGAGAACCTGATGCTGCAGGTGCATCAGCTAGGGGATCTGGGTGAGCGGATGCGGGAACTGTA
CGAGCGATCGCTGCTGGAAACCGCACTGGCGGCTCGCCGGCAACTGGTCGGAGCCCCTAGCGCTGCTGCAACGAGTAATC
TTTCCACCTTCCCCACCGATCAGTTCGACGATCTAGAACTCGATCGCTTCAGTGGTTTCCACTCCATCTCCCAAGAAATG
ATGGAGTTGCTGGTGCGGTTGCGCGAGGCGGCCTCAGACATTGACTTCATGGTCAATGAACCGTTTGACCAACTGACCCG
CAACTTCCAGCAAATTACCCTGCAACTGCAGAGCGAGCTGAACCAGACGCGCATGGTCCCCTTCTCGGACCTCACCGACC
AACTCCCGCGTGCCGTTCGGGAGATTTCGCGCCGCTGCGGTAAAGGGGCTCACCTCGAGATTGAGGGGCAAGACATCTTG
ATTGACAAGATGATCCTGCAAAAACTGCAGGCGCCCATGACCCACTTGATTAACAACGCCCTCAGTCATGGCATTGAAAC
GGCAGAAGTGCGGCAATACCGCAATAAATCCCCGGAGGGAACGCTGGTAGTTCGGGCTTCGCTGCAGGGCAACCGGACCC
TGATTACCGTCAGTGACGACGGGGCAGGCATTGATGCGGAGCAGGTGAAGATCAAAGCTCTCTCACGGGGTCTGATTACC
CCAGAAGAAGCCGCAGGCATGCGCGTGCGGGAGATTTACGAACTCCTGTTCCGGCCGGGCTTTAGTACCCGCGACCAAGC
TGATGAGCTCGCTGGACGCGGGGTTGGCTTGGATGTAGTGCGGCGAGCGCTGCATGAAATTCAAGGCGAGATTGTGGTCG
ATTCGGAGCTGGGTAAAGGAACGACCTTTACCTTCCGACTACCCTTGACGCTCTCGATTACCAAAGCCTTGACCTGTCTA
CACGAGCGGGCACGGCTGGCCTTCCCGATGGACAGCGTCGAGGAGATGCTCGACATTCCTCAGCAACGCCTCTCGATGGG
GCCGCAAGGCCAACTAGCGTTGGACTGGCACAATCAATCGCTGCCAGTGTTTCCACTCTCATCACTGCTGAATTTCTACC
TGCCATTCGGGCGCACCCGCTACTACAACAATCTGGGTGATGACGGCGTGGTGTCGATTGTCATCCTGCGCAATGACAAC
GAGTACCTCGCCGTTCAGACCGATCAGATTGAGGGCGAGCGTGAAATTGTGATCAAGCAGATCGAAGGTCCGATCGCTAA
ACCCCTCGGCATTCTGGGGGTCACGGTTCGCTCCGACGGTCAGGTGATGCCAATTGTCGACGTCTTGGAACTGTTTGACA
TCGCCTATGGACGGGTGCGGCAGCGCCAGACGGCTCCAACGCCACCTAGCTCTGATGAACTCAACACCGCGACCGAACCC
ATGGTGCTGATTGTCGATGACTCGATCACCGTCCGCGAACTGCTGTCGATGACCTTCAAGAAGGCAGGCTACATCGTCGA
GCAGGCACGCAATGGTCAAGAAGCCCTCGAAAAACTCTATTCGGGGCTGCCCTGCGATCTGGTCTTCTGCGATATCGAGA
TGCCGAAGATGAATGGCCTAGAGCTCTTAGAGCGCCTGCAGGCGGACCCCAAACTGCGGCGGTTACCAGTAGCTATGCTG
ACATCGCGAGGTGCCGATCGCCATCGACAGATCGCGGCTCACTTGGGGGCACGGGCCTACTTCTCCAAGCCCTACCTCGA
GGAGCAACTGTTGGAGGCATCAGCACGCCTGAGAAACGGCGAACGGCTGATTTAG

Domains

Predicted by InterProScan.

CheW-like domain (CheW)

(637-773)

Response regulator receiver domain (Response_reg)

(802-913)

Hpt domain (Hpt)

(9-95)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(289-359)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(492-630)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

56.098

70.996

0.398