Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VZH09_RS01585 Genome accession   NZ_CP143859
Coordinates   328477..328848 (+) Length   123 a.a.
NCBI ID   WP_208677541.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323477..333848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZH09_RS01570 (VZH09_01570) - 323676..325478 (-) 1803 WP_338462204.1 ABC transporter ATP-binding protein -
  VZH09_RS01575 (VZH09_01575) aspS 325660..327459 (+) 1800 WP_338462205.1 aspartate--tRNA ligase -
  VZH09_RS01580 (VZH09_01580) truB 327503..328387 (-) 885 WP_208673142.1 tRNA pseudouridine(55) synthase TruB -
  VZH09_RS01585 (VZH09_01585) pilH 328477..328848 (+) 372 WP_208677541.1 response regulator Machinery gene
  VZH09_RS01590 (VZH09_01590) rpmA 328976..329242 (-) 267 WP_208673138.1 50S ribosomal protein L27 -
  VZH09_RS01595 (VZH09_01595) rplU 329277..329660 (-) 384 WP_208673136.1 50S ribosomal protein L21 -
  VZH09_RS01600 (VZH09_01600) - 329897..330751 (+) 855 WP_208673134.1 circadian clock protein KaiA -
  VZH09_RS01605 (VZH09_01605) kaiB 330841..331149 (+) 309 WP_208677542.1 circadian clock protein KaiB -
  VZH09_RS01610 (VZH09_01610) kaiC 331201..332760 (+) 1560 WP_208677543.1 circadian clock protein KaiC -
  VZH09_RS01615 (VZH09_01615) - 332757..333764 (-) 1008 WP_338462206.1 acyl-CoA dehydrogenase family protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13495.44 Da        Isoelectric Point: 4.4829

>NTDB_id=844463 VZH09_RS01585 WP_208677541.1 328477..328848(+) (pilH) [Synechococcus elongatus IITB7]
MANILVVDDSSLYLELARQALAEHGHHVTLANNGQEALQTIAQQKPDLILLDIVMPEMNGYDVLRSLKKSPDTASIPVIL
CSTKGEDFDKYWGLKQGATAYLTKPYEVNDLLVLVQEQISAAG

Nucleotide


Download         Length: 372 bp        

>NTDB_id=844463 VZH09_RS01585 WP_208677541.1 328477..328848(+) (pilH) [Synechococcus elongatus IITB7]
ATGGCCAATATCCTCGTTGTTGACGACAGCAGTCTCTATTTAGAACTGGCGCGTCAAGCGCTAGCTGAACATGGCCATCA
CGTGACTCTTGCCAACAATGGTCAGGAAGCTTTACAAACCATTGCCCAGCAAAAGCCAGACCTGATCTTGCTCGACATTG
TGATGCCGGAAATGAATGGCTACGATGTCTTGCGATCACTCAAGAAATCGCCGGACACAGCCAGCATTCCCGTCATCCTT
TGTTCCACGAAGGGCGAAGACTTCGATAAGTATTGGGGTCTAAAGCAGGGCGCGACTGCTTACTTAACCAAGCCCTATGA
GGTCAACGATCTGCTGGTTTTGGTACAGGAACAAATTAGCGCTGCAGGTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

47.009

95.122

0.447