Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QLQ02_RS14280 Genome accession   NZ_CP127833
Coordinates   2805187..2805933 (+) Length   248 a.a.
NCBI ID   WP_286058229.1    Uniprot ID   -
Organism   Bacillus mojavensis strain KRS009     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2800187..2810933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS14265 - 2800413..2800604 (-) 192 WP_286058227.1 hypothetical protein -
  QLQ02_RS14270 valS 2801052..2803694 (+) 2643 WP_010335170.1 valine--tRNA ligase -
  QLQ02_RS14275 - 2803754..2805046 (+) 1293 WP_286058228.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  QLQ02_RS14280 comC 2805187..2805933 (+) 747 WP_286058229.1 A24 family peptidase Machinery gene
  QLQ02_RS14285 - 2806066..2807064 (+) 999 WP_286058230.1 SPOR domain-containing protein -
  QLQ02_RS14290 - 2807215..2807784 (+) 570 WP_268445613.1 Maf family nucleotide pyrophosphatase -
  QLQ02_RS14295 radC 2807821..2808516 (+) 696 WP_286058231.1 DNA repair protein RadC -
  QLQ02_RS14300 mreB 2808608..2809621 (+) 1014 WP_010335164.1 cell shape-determining protein MreB -
  QLQ02_RS14305 mreC 2809652..2810524 (+) 873 WP_010335163.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26559.24 Da        Isoelectric Point: 9.7311

>NTDB_id=844457 QLQ02_RS14280 WP_286058229.1 2805187..2805933(+) (comC) [Bacillus mojavensis strain KRS009]
MIPILFVLGLILGSFYYTAGCRIPLHMSIINPRSACSFCRRTLTPAELIPVLSFALLKGKCKSCGQKLSLMYPAAELSTA
CLFAAAGFRFGLSWELIVALLFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLYSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDIKLLAVIGLVLGVKMLAAAFFFSVLIGALYGTAAVLFGRLGRKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=844457 QLQ02_RS14280 WP_286058229.1 2805187..2805933(+) (comC) [Bacillus mojavensis strain KRS009]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTACACGGCAGGATGCCGTATCCCCTTACACAT
GTCCATCATAAACCCTCGTTCGGCATGTTCTTTTTGCCGGAGAACCTTAACTCCGGCAGAATTAATCCCTGTTTTATCTT
TTGCTCTGCTAAAAGGCAAATGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTATCCAGCGGCAGAGCTCTCGACAGCG
TGTTTATTTGCAGCCGCGGGATTTCGTTTTGGTTTGTCTTGGGAACTGATTGTTGCGTTGCTGTTTCTTTCTCTTCTTAT
CATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTTATTCATGGTATGAAGGCTTCATAGGTGCGGCTGCCGGTTTTCTTTTGCTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATATTAAATTACTTGCCGTCATCGGCCTTGTGCTTGGTGTGAAAAT
GCTTGCTGCCGCGTTTTTCTTTTCCGTACTTATAGGAGCATTGTACGGAACTGCCGCTGTTCTGTTCGGAAGGCTGGGCA
GAAAACAGCCGATTCCCTTTGCACCGGCAATTGCGGCAGGAAGCATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAATGGCGTTAGGGTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

81.048

100

0.81