Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VZG28_RS11145 Genome accession   NZ_CP143853
Coordinates   2217733..2219319 (-) Length   528 a.a.
NCBI ID   WP_338441323.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2212733..2224319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZG28_RS11120 (VZG28_11120) mreD 2214124..2214807 (-) 684 WP_338441321.1 rod shape-determining protein MreD -
  VZG28_RS11125 (VZG28_11125) mreC 2214768..2215517 (-) 750 WP_208675101.1 rod shape-determining protein MreC -
  VZG28_RS11130 (VZG28_11130) - 2215542..2216543 (-) 1002 WP_275937699.1 rod shape-determining protein -
  VZG28_RS11135 (VZG28_11135) ssb 2216772..2217134 (+) 363 WP_208675098.1 single-stranded DNA-binding protein Machinery gene
  VZG28_RS11140 (VZG28_11140) - 2217262..2217693 (+) 432 WP_338441322.1 GNAT family N-acetyltransferase -
  VZG28_RS11145 (VZG28_11145) comA 2217733..2219319 (-) 1587 WP_338441323.1 phospholipase D-like domain-containing protein Machinery gene
  VZG28_RS11150 (VZG28_11150) - 2219334..2220422 (+) 1089 WP_338441324.1 potassium channel protein -
  VZG28_RS11155 (VZG28_11155) - 2220556..2221200 (+) 645 WP_338441325.1 Coq4 family protein -
  VZG28_RS11160 (VZG28_11160) - 2221646..2222245 (+) 600 WP_338441326.1 class I SAM-dependent methyltransferase -
  VZG28_RS11165 (VZG28_11165) - 2222404..2223630 (-) 1227 WP_338429779.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 58116.58 Da        Isoelectric Point: 5.2502

>NTDB_id=844447 VZG28_RS11145 WP_338441323.1 2217733..2219319(-) (comA) [Synechococcus elongatus IITB4]
MDVCVLVGAGQLELYPAQRSPREEVKLSLNLAGLEVGSRPIEECFPLLKMKPGVIALLLGLLTACQAPLAQILPVAGGGS
TRWDVNAPLQVAFNHNPDQRFTDGLGRDREGDDLEGRLLTSLEQATTSIDVAVQEIQLPRLATVLAQKHQAGIPVRVILE
NQYRQPWSQRLSTPMSDRDRQRLENYRQLADRNGDGQLSPAEIATGDAVVILELAGVPILDDTADGSKGSGLMHHKFAII
DRQWVVTGSANWTASDFFGDPGRLASRGNANHLLWFRSPAIAATFQTEFDLMWGDGPDNLPDSLFGRAKPPRSPQSVRVG
QTRVLVQFSPSSLRLPWEQSTNGMIARYLTQAQQQVDLALFVFSEQAIADVLEARSQQGTQIRLLIDPGFAYRPYSELLD
AFGLSLADRDCRVEPNNRPWATPLRTAGVPRLAPGDTLHHKFAVIDRQRVLTGSHNWSAAANENNDETFLVIEDATLAAR
FSAEFERLYASAFLGIPPALQRRVNEANRRCGSRLETAPSRDSAEPED

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=844447 VZG28_RS11145 WP_338441323.1 2217733..2219319(-) (comA) [Synechococcus elongatus IITB4]
ATGGATGTCTGTGTTCTAGTCGGAGCGGGTCAACTGGAACTGTATCCAGCGCAGCGATCGCCGAGGGAGGAGGTAAAGCT
GAGCTTAAATCTGGCTGGCTTGGAGGTCGGATCACGTCCTATTGAAGAGTGCTTTCCACTGCTCAAGATGAAGCCTGGAG
TGATCGCCCTACTGCTAGGGCTACTAACCGCCTGCCAAGCCCCGCTCGCGCAGATTCTCCCGGTTGCTGGCGGTGGCTCG
ACTCGTTGGGATGTCAATGCACCCCTCCAAGTTGCGTTTAATCACAATCCAGATCAGCGATTTACCGATGGCTTAGGGCG
CGATCGCGAGGGAGATGATCTGGAAGGGCGACTCCTTACCAGCTTGGAACAGGCGACAACCTCAATCGATGTCGCGGTTC
AGGAAATCCAGCTTCCCCGACTGGCAACAGTCCTGGCCCAAAAACACCAGGCGGGCATCCCGGTTCGCGTCATCTTGGAA
AACCAATATCGCCAGCCCTGGAGTCAGCGCCTCTCTACCCCAATGAGCGATCGCGATCGGCAACGACTGGAGAACTACCG
GCAACTGGCCGATCGCAATGGAGATGGCCAGCTCAGCCCAGCTGAAATTGCTACGGGAGATGCTGTCGTCATCCTTGAGC
TTGCTGGGGTGCCGATCCTAGATGACACCGCTGATGGCAGCAAAGGCAGCGGCCTCATGCACCACAAGTTTGCGATCATC
GATCGCCAATGGGTCGTCACCGGTTCAGCCAACTGGACAGCCAGTGATTTCTTTGGCGATCCGGGTCGACTGGCCAGCCG
AGGCAATGCCAATCATCTGCTCTGGTTCCGCAGCCCTGCGATCGCCGCTACCTTCCAAACAGAATTTGACCTCATGTGGG
GAGATGGCCCTGATAACTTGCCCGACAGCCTGTTTGGTCGGGCGAAGCCGCCGCGATCGCCGCAATCAGTGCGTGTGGGG
CAGACCCGTGTCCTGGTGCAGTTCTCGCCCTCCAGTCTGCGATTGCCTTGGGAGCAAAGTACCAATGGCATGATCGCTCG
TTACCTCACGCAAGCTCAACAGCAGGTTGATCTGGCGCTCTTTGTTTTTTCCGAGCAGGCGATCGCGGATGTTTTGGAAG
CGCGATCGCAGCAAGGCACCCAGATTCGCTTGCTGATTGACCCTGGCTTTGCCTATCGGCCCTACAGCGAACTCTTGGAT
GCGTTTGGTCTCAGTCTTGCCGATCGCGACTGTCGTGTTGAGCCTAACAATCGCCCCTGGGCAACACCACTGAGGACTGC
CGGAGTGCCGCGTTTGGCTCCGGGCGATACGTTGCATCACAAGTTCGCCGTGATCGATCGCCAGCGTGTGCTGACCGGAT
CCCACAACTGGAGTGCAGCGGCCAACGAAAACAACGATGAAACCTTTCTGGTCATTGAGGATGCAACCTTGGCAGCTCGA
TTCAGTGCTGAATTTGAGCGACTCTATGCCAGTGCGTTCTTAGGAATCCCGCCAGCTCTACAACGGCGAGTCAACGAGGC
CAATCGCCGCTGTGGGAGTCGATTGGAAACAGCACCCAGCCGAGATTCTGCAGAGCCTGAAGACTAA

Domains

Predicted by InterProScan.

PLD-like domain (PLDc_2)

(347-488)

PLD-like domain (PLDc_2)

(119-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

45.511

90.72

0.413