Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QLQ02_RS07070 Genome accession   NZ_CP127833
Coordinates   1391050..1392162 (-) Length   370 a.a.
NCBI ID   WP_168746732.1    Uniprot ID   A0AAP3CR22
Organism   Bacillus mojavensis strain KRS009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1386050..1397162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS07055 gyrA 1386132..1388603 (-) 2472 WP_286059184.1 DNA gyrase subunit A -
  QLQ02_RS07060 gyrB 1388815..1390731 (-) 1917 WP_010332677.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QLQ02_RS07065 remB 1390787..1391032 (-) 246 WP_010332676.1 extracellular matrix regulator RemB -
  QLQ02_RS07070 recF 1391050..1392162 (-) 1113 WP_168746732.1 DNA replication/repair protein RecF Machinery gene
  QLQ02_RS07075 rlbA 1392178..1392393 (-) 216 WP_003219264.1 ribosome maturation protein RlbA -
  QLQ02_RS07080 dnaN 1392525..1393661 (-) 1137 WP_010332674.1 DNA polymerase III subunit beta -
  QLQ02_RS07085 dnaA 1393855..1395195 (-) 1341 WP_010332673.1 chromosomal replication initiator protein DnaA -
  QLQ02_RS07090 rpmH 1395826..1395960 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  QLQ02_RS07095 rnpA 1396109..1396462 (+) 354 WP_010332672.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42378.42 Da        Isoelectric Point: 7.3662

>NTDB_id=844434 QLQ02_RS07070 WP_168746732.1 1391050..1392162(-) (recF) [Bacillus mojavensis strain KRS009]
MHIQNLELTSYRNYEHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKKNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=844434 QLQ02_RS07070 WP_168746732.1 1391050..1392162(-) (recF) [Bacillus mojavensis strain KRS009]
TTGCATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGAACATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATTGGAGAAAATGCCCAGGGGAAAACAAACCTCATGGAAGCGATCTATGTCTTGTCCATGGCAAAATCGCATCGGA
CTTCAAATGACAAAGAACTTATCCGATGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGAAAAACGGAGCG
ATTCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATCGAACAGCAAAAGCTCAGCCAGTA
TGTCGGTGCCCTCAACACCATCATGTTTGCGCCGGAAGATTTAAACCTTGTAAAGGGAAGCCCTCAAGTGAGACGGAGGT
TTCTTGACATGGAAATCGGCCAAGTTTCTCCCGTCTACCTGTATGACCTTTCTCTTTACCAGAAGATTCTTTCCCAGCGA
AATCACTTTCTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACAATGCTTGATGTTCTGACTGATCAGCTTATTGA
AGTTGCCGCAAAAGTCGTCGTAAAACGTCTGCAATTCACGGCACAGCTCGAAAAATGGGCGCAGCCTATCCATTCGGGCA
TCTCAAGAGGGCTTGAGGAACTGACGCTGAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGCGTCACGCTGTCTGGACCTCATCG
GGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTACGGTTCTCAAGGACAGCAGCGGACGACGGCATTAT
CCCTTAAGCTGGCTGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTGCTGAGT
GAGCTGGATGATTATCGCCAATCGCACTTGCTTCATACCATCCAGGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGGCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

97.838

100

0.978