Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QLQ02_RS06510 Genome accession   NZ_CP127833
Coordinates   1288224..1289600 (-) Length   458 a.a.
NCBI ID   WP_229150208.1    Uniprot ID   -
Organism   Bacillus mojavensis strain KRS009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1283224..1294600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS06490 ispF 1284736..1285212 (-) 477 WP_010332754.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QLQ02_RS06495 ispD 1285205..1285903 (-) 699 WP_010332753.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QLQ02_RS06500 - 1285918..1287018 (-) 1101 WP_168746772.1 PIN/TRAM domain-containing protein -
  QLQ02_RS06505 disA 1287138..1288220 (-) 1083 WP_003242042.1 DNA integrity scanning diadenylate cyclase DisA -
  QLQ02_RS06510 radA 1288224..1289600 (-) 1377 WP_229150208.1 DNA repair protein RadA Machinery gene
  QLQ02_RS06515 clpC 1289692..1292124 (-) 2433 WP_010332750.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  QLQ02_RS06520 - 1292121..1293212 (-) 1092 WP_168746771.1 protein arginine kinase -
  QLQ02_RS06525 mcsA 1293212..1293769 (-) 558 WP_010332748.1 protein-arginine kinase activator protein McsA -
  QLQ02_RS06530 ctsR 1293783..1294247 (-) 465 WP_010332747.1 transcriptional regulator CtsR -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49506.03 Da        Isoelectric Point: 8.4759

>NTDB_id=844430 QLQ02_RS06510 WP_229150208.1 1288224..1289600(-) (radA) [Bacillus mojavensis strain KRS009]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSGSTRHVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIEEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAALMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSSGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVSEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=844430 QLQ02_RS06510 WP_229150208.1 1288224..1289600(-) (radA) [Bacillus mojavensis strain KRS009]
ATGGCTAAAACAAAATCCAAATTCATCTGCCAATCCTGCGGCTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGCTG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATTAAAAAAGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACCGTACAGAAACCTTCCCCCATAACATCAATCGAAACATCAGAAGAACCTCGGGTTAAAACACAGCTCGGCGAGTTT
AACAGAGTGCTCGGAGGCGGAGTGGTAAAGGGATCACTTGTTTTAATTGGCGGGGACCCCGGTATCGGGAAATCGACCTT
ACTACTGCAAGTATCCGCTCAGCTATCTGGTTCAACGCGTCATGTTCTATACATTTCAGGAGAAGAATCGGTAAAACAAA
CGAAATTAAGAGCAGACCGTCTGGGCATAAATAATCCCTCACTGCATGTTTTATCCGAAACCGATATGGAGTATATTTCG
TCTGCTATAGAAGAGATGAATCCAGCGTTTGTCGTTGTCGACTCTATTCAAACGGTTTATCAAAGTGATATCACATCGGC
TCCCGGCAGTGTATCACAAGTAAGAGAATGTACAGCCGCGCTGATGAAAATTGCAAAAACAAAAGGTATTCCGATATTTA
TTGTGGGTCACGTAACGAAAGAAGGGTCCATCGCGGGGCCGAGACTGCTGGAGCATATGGTTGACACTGTTTTATACTTT
GAAGGAGAACGTCACCATACTTTCCGAATCTTACGGGCTGTAAAAAACCGCTTTGGTTCTACAAACGAAATGGGTATTTT
TGAAATGCGGGAAGAAGGGCTCACTGAGGTACTGAATCCCTCAGAGATCTTCTTAGAAGAGCGTTCGGCGGGATCTTCGG
GGTCGAGCATAACGGCTTCTATGGAAGGTACAAGGCCTATTCTTGTTGAAATTCAGGCACTCATCTCGCCAACGAGCTTT
GGCAATCCGCGGCGTATGGCAACAGGGATAGATCATAACAGGGTGTCACTGTTAATGGCTGTATTAGAAAAAAGAGTAGG
GCTGCTGCTGCAAAATCAGGATGCATATTTGAAGGTAGCGGGCGGCGTCAAACTAGATGAACCTGCGATTGATCTTGCTA
TAGCGGTAAGTATCGCATCGAGCTTTAGAGATACACCTCCAAATCCTGCAGATTGCTTTATAGGAGAAGTGGGATTAACC
GGAGAAGTCCGCCGGGTATCAAGAATTGAACAGCGTGTAAAAGAAGCGGCAAAGCTTGGCTTTAAACGCATGATCATACC
TGCGGCAAATCTGGATGGATGGACGAAACCAAAAGGGATTGAGGTCATCGGAGTAGCAAATGTTTCAGAGGCACTTCGTA
CTTCATTAGGAGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

97.817

100

0.978
  radA Streptococcus mitis NCTC 12261

63.576

98.908

0.629
  radA Streptococcus pneumoniae Rx1

63.576

98.908

0.629
  radA Streptococcus pneumoniae D39

63.576

98.908

0.629
  radA Streptococcus pneumoniae R6

63.576

98.908

0.629
  radA Streptococcus pneumoniae TIGR4

63.576

98.908

0.629
  radA Streptococcus mitis SK321

63.355

98.908

0.627