Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QLQ02_RS01400 Genome accession   NZ_CP127833
Coordinates   246558..247136 (-) Length   192 a.a.
NCBI ID   WP_010333638.1    Uniprot ID   A0AAP3CU61
Organism   Bacillus mojavensis strain KRS009     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 241558..252136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ02_RS01370 - 242057..242677 (-) 621 WP_010333644.1 TVP38/TMEM64 family protein -
  QLQ02_RS01375 - 242833..243195 (+) 363 WP_168747355.1 hypothetical protein -
  QLQ02_RS01380 - 243421..243621 (+) 201 WP_010333642.1 DUF3311 domain-containing protein -
  QLQ02_RS01385 - 243618..245087 (+) 1470 WP_168747354.1 sodium:solute symporter -
  QLQ02_RS01390 - 245129..245398 (-) 270 WP_010333640.1 excalibur calcium-binding domain-containing protein -
  QLQ02_RS01395 - 245613..246512 (+) 900 WP_168747353.1 SDR family oxidoreductase -
  QLQ02_RS01400 comK 246558..247136 (-) 579 WP_010333638.1 competence transcription factor ComK Regulator
  QLQ02_RS01405 - 247429..247662 (+) 234 WP_010333637.1 IDEAL domain-containing protein -
  QLQ02_RS01410 - 247691..248548 (-) 858 WP_286058768.1 SDR family oxidoreductase -
  QLQ02_RS01415 - 248660..250189 (+) 1530 WP_286058769.1 FAD-dependent oxidoreductase -
  QLQ02_RS01420 hemAT 250332..251630 (+) 1299 WP_268447668.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22412.71 Da        Isoelectric Point: 7.6610

>NTDB_id=844416 QLQ02_RS01400 WP_010333638.1 246558..247136(-) (comK) [Bacillus mojavensis strain KRS009]
MSQKTDAPLESYEVNSATIAVLPEEIDGKICSKIIEKDCMFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTLELPVSCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=844416 QLQ02_RS01400 WP_010333638.1 246558..247136(-) (comK) [Bacillus mojavensis strain KRS009]
ATGAGTCAGAAAACTGACGCACCACTAGAATCGTATGAAGTAAACAGCGCAACAATTGCCGTGCTGCCAGAAGAAATCGA
CGGCAAAATCTGTTCAAAAATCATTGAAAAAGACTGTATGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGATTTTTCGGATCAAGCTACGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCTCACAAACCACCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACTAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAACGGAAAAACGTTGGAGCTGC
CGGTCTCATGCAATTCGTTCGAGAATCAGGTATACCGGACAGCCTGGCTCAGAACCAAATTTCAGGACAGAATCGAACAC
CGTGTCCCGAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTTGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

95.833

100

0.958