Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QRO24_RS11450 Genome accession   NZ_CP127829
Coordinates   2399222..2399737 (+) Length   171 a.a.
NCBI ID   WP_018347305.1    Uniprot ID   A0A0A3A3X9
Organism   Gallibacterium anatis strain OH/Ck/12965/20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2394222..2404737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRO24_RS11440 (QRO24_11385) - 2395375..2395959 (-) 585 WP_021462093.1 hypothetical protein -
  QRO24_RS11445 (QRO24_11390) uvrA 2396246..2399080 (-) 2835 WP_409025764.1 excinuclease ABC subunit UvrA -
  QRO24_RS11450 (QRO24_11395) ssb 2399222..2399737 (+) 516 WP_018347305.1 single-stranded DNA-binding protein Machinery gene
  QRO24_RS11455 (QRO24_11400) - 2399834..2400376 (-) 543 WP_409025765.1 LysR substrate-binding domain-containing protein -
  QRO24_RS11460 (QRO24_11405) - 2400407..2400844 (+) 438 Protein_2216 amidophosphoribosyltransferase -
  QRO24_RS11465 (QRO24_11410) - 2400844..2401419 (+) 576 WP_409025766.1 UbiX family flavin prenyltransferase -
  QRO24_RS11470 (QRO24_11415) - 2401783..2402193 (+) 411 WP_021462089.1 DUF805 domain-containing protein -
  QRO24_RS11475 (QRO24_11420) - 2402324..2403391 (+) 1068 WP_409025767.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -
  QRO24_RS11480 (QRO24_11425) - 2403403..2404116 (+) 714 WP_021462087.1 DUF6977 family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19146.28 Da        Isoelectric Point: 4.9833

>NTDB_id=844382 QRO24_RS11450 WP_018347305.1 2399222..2399737(+) (ssb) [Gallibacterium anatis strain OH/Ck/12965/20]
MAGVNKVIIVGNLGNDPELRTFANGDAVANISVATSERWQDKQSGEWREITEWHRIVLFRRLAEIAGQYLRKGSKVYIEG
KLRTRKWQDQNGQDRYTTEIQADTLQMLDSRSDRMGADMSAPMAQPQNQFAQPSYNQAAAQPNQFAQPAAAKAPQAAVNP
DTADFDDDMPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=844382 QRO24_RS11450 WP_018347305.1 2399222..2399737(+) (ssb) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGGCAGGCGTTAATAAAGTAATTATTGTGGGAAATTTGGGAAATGATCCTGAATTAAGAACCTTTGCAAATGGCGATGC
GGTCGCCAATATCAGTGTTGCCACCAGTGAACGTTGGCAAGACAAACAGAGCGGAGAATGGCGAGAAATTACTGAATGGC
ACCGCATCGTGTTATTCCGCCGTTTGGCAGAAATCGCCGGACAATATTTGCGTAAAGGATCAAAAGTTTATATAGAAGGC
AAATTACGCACGCGTAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACCGAAATTCAAGCGGACACATTACAAAT
GTTGGACAGTCGCAGCGATCGTATGGGCGCGGATATGTCTGCACCAATGGCTCAACCGCAAAATCAGTTTGCGCAACCGT
CTTATAATCAAGCGGCAGCTCAACCTAACCAATTCGCACAACCGGCAGCCGCTAAAGCACCGCAAGCAGCGGTAAATCCG
GATACAGCAGATTTTGATGATGATATGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3A3X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.286

100

0.684
  ssb Vibrio cholerae strain A1552

52

100

0.532
  ssb Neisseria meningitidis MC58

42.938

100

0.444
  ssb Neisseria gonorrhoeae MS11

43.103

100

0.439