Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   VZF83_RS01680 Genome accession   NZ_CP143849
Coordinates   350866..353640 (-) Length   924 a.a.
NCBI ID   WP_338430645.1    Uniprot ID   -
Organism   Synechococcus elongatus IITB3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345866..358640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZF83_RS01655 (VZF83_01655) - 345908..346423 (+) 516 WP_338430639.1 DUF3427 domain-containing protein -
  VZF83_RS01660 (VZF83_01660) rodA 346450..347715 (-) 1266 WP_338430641.1 rod shape-determining protein RodA -
  VZF83_RS01665 (VZF83_01665) - 347765..348832 (-) 1068 WP_338430643.1 Mrp/NBP35 family ATP-binding protein -
  VZF83_RS01670 (VZF83_01670) - 348963..350339 (-) 1377 WP_338430644.1 glycosyltransferase family 2 protein -
  VZF83_RS01675 (VZF83_01675) - 350626..350862 (-) 237 WP_208677661.1 hypothetical protein -
  VZF83_RS01680 (VZF83_01680) pilL-C 350866..353640 (-) 2775 WP_338430645.1 hybrid sensor histidine kinase/response regulator Machinery gene
  VZF83_RS01685 (VZF83_01685) - 353643..356144 (-) 2502 WP_338430647.1 methyl-accepting chemotaxis protein -
  VZF83_RS01690 (VZF83_01690) - 356173..356655 (-) 483 WP_208672876.1 chemotaxis protein CheW -
  VZF83_RS01695 (VZF83_01695) - 356903..357664 (-) 762 WP_338430649.1 YebC/PmpR family DNA-binding transcriptional regulator -
  VZF83_RS01700 (VZF83_01700) - 357785..358399 (+) 615 WP_338430651.1 hypothetical protein -

Sequence

Protein


Download         Length: 924 a.a.        Molecular weight: 102403.27 Da        Isoelectric Point: 4.3848

>NTDB_id=844367 VZF83_RS01680 WP_338430645.1 350866..353640(-) (pilL-C) [Synechococcus elongatus IITB3]
MSPTSDNVLRSLFLRETRENLQLLSNTLSQLEAGLPEATTLADASRAAHSLKGAAALLKFETFRQLAAGLESCLSLLAEA
ELPDYAASLPLFQQTTTLLVTATDRIEADADDLGLLPDEGQHLVEQLTRLQGTLETALHTPVDQQEVVENTLEDLLSQDF
EPVLPPADPSLDETLDALLGDLEELGKPADSDGDRPPLEELNFDLEDWIEASEEASQAAEVDVAAQLKVLEAAIADLTQQ
SQEQPLTLGIDPAILSAVIQAPPRLPVTLTLEPVAKARSQDRGPVAFEQTLRVPVRQLDNLSNLVGEIVVSRNTLESDQS
HLRETLENLMLQVHQLGDLGERMRELYERSLLETALAARRQLVGAPSAAATSNLSTFPTDQFDDLELDRFSGFHSISQEM
MELLVRLREAASDIDFMVNEPFDQLTRNFQQITLQLQSELNQTRMVPFSDLTDQLPRAVREISRRCGKGAHLEIEGQDIL
IDKMILQKLQAPMTHLINNALSHGIETAEVRQYRNKSPEGTLVVRASLQGNRTLITVSDDGAGIDAEQVKIKALSRGLIT
PEEAAGMRVREIYELLFRPGFSTRDQADELAGRGVGLDVVRRALHEIQGEIVVDSELGKGTTFTFRLPLTLSITKALTCL
HERARLAFPMDSVEEMLDIPQQRLSMGPQGQLSLDWHNQSLPVFPLSSLLNFYLPFGRTRYYNNLGDDGVVSIVILRNDN
EYLAVQTDQIEGEREIVIKQIEGPIAKPLGILGVTVRSDGQVMPIVDVLELFDIAYGRVRQRQTAPTPPSSDELNTATEP
MVLIVDDSITVRELLSMTFKKAGYIVEQARNGQEALEKLYSGLPCDLVFCDIEMPKMNGLELLERLQADPKLRRLPVAML
TSRGADRHRQIAAHLGARAYFSKPYLEEQLLEASARLRNGERLI

Nucleotide


Download         Length: 2775 bp        

>NTDB_id=844367 VZF83_RS01680 WP_338430645.1 350866..353640(-) (pilL-C) [Synechococcus elongatus IITB3]
ATGTCACCCACCAGTGATAATGTCCTGCGATCGCTGTTTCTCCGAGAAACGCGGGAGAATTTACAGCTTCTCAGCAACAC
CCTCAGCCAGCTCGAAGCAGGCCTCCCAGAAGCGACCACGTTGGCGGACGCATCGCGGGCGGCTCACTCGCTCAAGGGTG
CAGCGGCTTTGCTTAAGTTCGAAACTTTCCGGCAGCTCGCAGCAGGTCTGGAATCTTGTCTATCGCTTCTCGCCGAGGCA
GAGCTACCGGACTACGCTGCCAGTCTGCCTCTGTTTCAGCAGACAACGACCCTGCTCGTGACCGCGACTGATCGGATCGA
GGCGGACGCTGATGATCTCGGCTTGCTGCCTGATGAAGGGCAGCACTTGGTCGAACAGTTGACCCGTCTGCAAGGAACGC
TGGAAACCGCTCTTCACACGCCTGTCGATCAGCAGGAAGTGGTTGAAAACACCCTTGAAGATTTACTCAGTCAAGACTTT
GAGCCTGTCTTGCCACCTGCCGATCCCAGTTTGGATGAGACGCTGGATGCCTTGCTCGGCGATCTCGAAGAACTCGGGAA
GCCTGCTGACTCCGACGGCGATCGCCCACCGCTGGAAGAACTTAACTTTGACCTTGAAGACTGGATTGAGGCCAGTGAAG
AAGCATCGCAGGCAGCTGAAGTAGACGTTGCCGCCCAGCTCAAAGTTCTAGAAGCCGCGATCGCCGATCTGACACAACAG
TCCCAAGAGCAACCCCTGACGCTGGGGATCGATCCCGCCATCTTGAGTGCTGTCATTCAAGCCCCACCACGGCTACCTGT
GACGTTGACCCTAGAGCCCGTCGCCAAAGCCCGCAGCCAGGATCGAGGCCCTGTGGCCTTCGAGCAGACGTTGCGGGTCC
CCGTACGGCAATTGGATAACCTCAGTAACCTGGTTGGGGAAATCGTTGTCAGCCGGAATACCCTCGAAAGCGATCAATCC
CACCTGCGGGAAACCCTCGAGAACCTGATGCTGCAGGTGCATCAGCTAGGGGATCTGGGTGAGCGGATGCGGGAACTGTA
CGAGCGATCGCTGCTGGAAACCGCACTGGCGGCTCGCCGGCAACTGGTCGGAGCCCCTAGCGCCGCCGCAACGAGTAATC
TTTCCACCTTCCCCACTGATCAGTTCGACGATCTAGAACTCGATCGCTTCAGTGGTTTCCACTCCATCTCCCAAGAAATG
ATGGAGTTGCTGGTGCGGTTGCGCGAGGCGGCCTCAGACATTGACTTCATGGTCAATGAACCGTTTGACCAACTGACCCG
CAACTTTCAGCAAATTACCCTGCAACTGCAGAGCGAGCTGAACCAGACGCGCATGGTCCCCTTCTCGGACCTCACCGACC
AGCTCCCGCGTGCCGTTCGGGAGATTTCGCGCCGCTGCGGTAAAGGGGCTCACCTCGAGATTGAGGGGCAAGACATCTTG
ATCGACAAGATGATCCTGCAAAAACTGCAGGCGCCCATGACCCACTTGATTAACAACGCCCTCAGTCATGGCATTGAAAC
TGCAGAAGTGCGGCAATACCGCAATAAATCCCCGGAGGGAACGCTGGTAGTTCGGGCTTCGCTGCAGGGCAACCGGACCC
TGATTACCGTCAGTGACGACGGGGCAGGCATTGATGCGGAGCAGGTGAAAATCAAAGCTCTCTCACGGGGTCTGATTACC
CCAGAAGAAGCCGCAGGCATGCGCGTGCGGGAGATTTACGAACTCCTGTTCCGGCCGGGCTTTAGTACCCGCGACCAAGC
TGATGAGCTCGCTGGACGTGGGGTTGGCTTGGATGTAGTGCGGCGAGCGCTGCATGAAATTCAAGGCGAGATTGTGGTCG
ATTCGGAGCTGGGTAAAGGAACGACTTTTACTTTCCGACTACCCCTGACGCTCTCGATTACCAAAGCCTTGACCTGTCTA
CACGAGCGGGCACGGCTGGCCTTCCCAATGGACAGCGTCGAGGAGATGCTCGACATTCCTCAGCAACGCCTCTCGATGGG
GCCGCAAGGTCAACTGTCGTTGGACTGGCACAATCAATCGCTGCCAGTATTTCCGCTCTCATCGCTGCTGAATTTCTACC
TGCCATTCGGGCGCACCCGCTACTACAACAATCTGGGTGATGACGGCGTGGTGTCGATTGTCATCCTGCGCAATGACAAC
GAGTACCTCGCCGTTCAGACCGATCAGATTGAGGGCGAGCGTGAAATTGTGATCAAGCAGATCGAAGGTCCGATCGCTAA
ACCCCTCGGTATTCTGGGGGTCACGGTTCGCTCCGACGGTCAGGTGATGCCAATTGTCGACGTCTTGGAACTGTTTGACA
TCGCCTACGGACGGGTGCGGCAGCGCCAGACGGCTCCAACGCCACCCAGCTCTGATGAACTCAACACCGCGACCGAACCC
ATGGTGCTGATTGTCGATGACTCGATCACCGTCCGTGAACTGCTGTCGATGACCTTCAAGAAGGCAGGCTACATCGTCGA
GCAGGCGCGCAATGGTCAAGAGGCCCTTGAAAAACTCTATTCGGGACTGCCCTGCGATCTGGTCTTCTGCGATATCGAGA
TGCCGAAGATGAATGGCCTAGAGCTCTTAGAGCGCCTGCAGGCGGATCCCAAACTGCGGCGGTTACCGGTGGCTATGCTG
ACATCGCGAGGTGCCGATCGCCATCGACAGATCGCGGCTCACTTGGGGGCACGGGCCTACTTCTCCAAGCCCTACCTCGA
GGAGCAACTGTTGGAGGCATCAGCACGCCTGAGAAACGGCGAACGGCTGATTTAG

Domains

Predicted by InterProScan.

Hpt domain (Hpt)

(9-95)

CheW-like domain (CheW)

(637-773)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(289-359)

Response regulator receiver domain (Response_reg)

(802-913)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(492-630)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

56.098

70.996

0.398