Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   QAA96_RS29890 Genome accession   NZ_CP143646
Coordinates   6393752..6394276 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain CPO174     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6388752..6399276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAA96_RS29875 (QAA96_029875) aroB 6389868..6390974 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  QAA96_RS29880 (QAA96_029880) aroK 6391024..6391542 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QAA96_RS29885 (QAA96_029885) pilQ 6391554..6393698 (-) 2145 WP_285239537.1 type 4a pilus secretin PilQ Machinery gene
  QAA96_RS29890 (QAA96_029890) comL/pilP 6393752..6394276 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QAA96_RS29895 (QAA96_029895) pilO 6394273..6394896 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QAA96_RS29900 (QAA96_029900) pilN 6394893..6395489 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QAA96_RS29905 (QAA96_029905) pilM 6395489..6396553 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QAA96_RS29910 (QAA96_029910) - 6396738..6399206 (+) 2469 WP_025297613.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=843931 QAA96_RS29890 WP_003095836.1 6393752..6394276(-) (comL/pilP) [Pseudomonas aeruginosa strain CPO174]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=843931 QAA96_RS29890 WP_003095836.1 6393752..6394276(-) (comL/pilP) [Pseudomonas aeruginosa strain CPO174]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362