Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QR565_RS24120 Genome accession   NZ_CP127387
Coordinates   5196028..5196585 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 101901100740-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5191028..5201585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR565_RS24100 pilR 5192304..5193641 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  QR565_RS24105 thiO 5193687..5194781 (-) 1095 WP_033943424.1 glycine oxidase ThiO -
  QR565_RS24110 - 5194916..5195425 (+) 510 WP_033999236.1 Tfp pilus assembly protein FimT/FimU -
  QR565_RS24115 - 5195531..5196037 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  QR565_RS24120 pilV 5196028..5196585 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  QR565_RS24125 pilW 5196582..5197406 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  QR565_RS24130 pilX 5197403..5197990 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QR565_RS24135 pilY1 5198002..5201493 (+) 3492 WP_033999239.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=843925 QR565_RS24120 WP_003119423.1 5196028..5196585(+) (pilV) [Pseudomonas aeruginosa strain 101901100740-1]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=843925 QR565_RS24120 WP_003119423.1 5196028..5196585(+) (pilV) [Pseudomonas aeruginosa strain 101901100740-1]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995