Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QR565_RS09945 Genome accession   NZ_CP127387
Coordinates   2143572..2144207 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 101901100740-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2138572..2149207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR565_RS09930 - 2139281..2140525 (+) 1245 WP_034053572.1 lipoprotein-releasing ABC transporter permease subunit -
  QR565_RS09935 - 2140610..2141143 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  QR565_RS09940 comA 2141274..2143499 (+) 2226 WP_126709761.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QR565_RS09945 exbB 2143572..2144207 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QR565_RS09950 - 2144204..2144644 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  QR565_RS09955 lpxK 2144644..2145642 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  QR565_RS09960 - 2145680..2145865 (+) 186 WP_003091157.1 Trm112 family protein -
  QR565_RS09965 kdsB 2145865..2146629 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QR565_RS09970 - 2146629..2147093 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  QR565_RS09975 murB 2147090..2148109 (+) 1020 WP_019726513.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=843911 QR565_RS09945 WP_003091163.1 2143572..2144207(+) (exbB) [Pseudomonas aeruginosa strain 101901100740-1]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=843911 QR565_RS09945 WP_003091163.1 2143572..2144207(+) (exbB) [Pseudomonas aeruginosa strain 101901100740-1]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81