Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QRY57_RS21225 Genome accession   NZ_CP127376
Coordinates   3798160..3798906 (-) Length   248 a.a.
NCBI ID   WP_026589894.1    Uniprot ID   A0A1H3KKC1
Organism   Bacillus arachidis strain YX15     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3793160..3803906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS21205 (QRY57_21210) dnaG 3793915..3795711 (-) 1797 WP_286016031.1 DNA primase -
  QRY57_RS21210 (QRY57_21215) - 3795750..3796208 (-) 459 WP_026589897.1 YaiI/YqxD family protein -
  QRY57_RS21215 (QRY57_21220) - 3796578..3797390 (-) 813 WP_026589896.1 pyruvate, water dikinase regulatory protein -
  QRY57_RS21220 (QRY57_21225) - 3797420..3798052 (-) 633 WP_026589895.1 helix-turn-helix transcriptional regulator -
  QRY57_RS21225 (QRY57_21230) recO 3798160..3798906 (-) 747 WP_026589894.1 DNA repair protein RecO Machinery gene
  QRY57_RS21230 (QRY57_21235) - 3798940..3799083 (-) 144 WP_000883924.1 YqzL family protein -
  QRY57_RS21235 (QRY57_21240) era 3799194..3800099 (-) 906 WP_090687520.1 GTPase Era -
  QRY57_RS21240 (QRY57_21245) - 3800092..3800490 (-) 399 WP_286016032.1 cytidine deaminase -
  QRY57_RS21245 (QRY57_21250) - 3800594..3800947 (-) 354 WP_286016033.1 diacylglycerol kinase family protein -
  QRY57_RS21250 (QRY57_21255) ybeY 3800944..3801414 (-) 471 WP_026589891.1 rRNA maturation RNase YbeY -
  QRY57_RS21255 (QRY57_21260) - 3801411..3803555 (-) 2145 WP_026589890.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28553.05 Da        Isoelectric Point: 8.0545

>NTDB_id=843794 QRY57_RS21225 WP_026589894.1 3798160..3798906(-) (recO) [Bacillus arachidis strain YX15]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASISQLMTHGHFLIQMGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDSEVLSLIYQTKMLPVLGMHPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFYHFDLARLGNVSVKDGTKRQMRTVLNTYYDEYCGIYLKSRRFL
EQLDKFRI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=843794 QRY57_RS21225 WP_026589894.1 3798160..3798906(-) (recO) [Bacillus arachidis strain YX15]
ATGTTTCAAAAAGTTGAGGGAATTGTCATCCGGACAACAGATTACGGAGAAACGAATAAAATTGTTACGATATTCTCCCG
TGAACTTGGAAAGGTAAGTGCAATGGCAAGAGGGGCGAAAAAACCGAAAAGTAGGTTAGCATCTATTTCGCAACTTATGA
CACATGGTCACTTTCTGATTCAAATGGGGTCTGGACTTGGGACTTTGCAGCAAGGTGAAATAATTTCATCGATGAAAGAA
ATTCGTGAGGATATATTTTTAACTGCATATGCATCATTTATCGTTGAATTGACTGATAAAGCAACTGAAGATAAGAAACA
TAATCCGTACTTATTTGAAATGTTATATCAAACGTTGCACTATATGTGTGAGGGTGTTGATTCCGAAGTATTGTCGTTAA
TTTATCAAACGAAAATGCTCCCTGTACTCGGGATGCATCCATATTTTGATACATGTGCCATTTGTCACCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCCGAGAAGGCGGTTTTCTGTGCTCGCGTCATGCTGAGCAGGATCCGTACCGTATTCCAGTGGG
AGAGGCCGTTCATAAATTGTTACGTCTCTTTTATCATTTTGATTTAGCTCGCCTTGGCAATGTATCTGTCAAAGATGGAA
CGAAGCGACAAATGCGTACAGTATTAAATACATATTATGATGAATATTGTGGAATCTATTTGAAATCAAGACGTTTTCTG
GAACAACTTGATAAATTTCGGATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H3KKC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552