Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QRY57_RS19800 Genome accession   NZ_CP127376
Coordinates   3545734..3546168 (-) Length   144 a.a.
NCBI ID   WP_286015921.1    Uniprot ID   -
Organism   Bacillus arachidis strain YX15     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3540734..3551168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS19785 (QRY57_19790) - 3541802..3542356 (+) 555 WP_026590159.1 PadR family transcriptional regulator -
  QRY57_RS19790 (QRY57_19795) metE 3542972..3545260 (+) 2289 WP_286015919.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  QRY57_RS19795 (QRY57_19800) comJ 3545288..3545677 (-) 390 WP_286015920.1 competence protein ComJ -
  QRY57_RS19800 (QRY57_19805) nucA/comI 3545734..3546168 (-) 435 WP_286015921.1 DNA-entry nuclease Machinery gene
  QRY57_RS19805 (QRY57_19810) - 3546408..3547151 (+) 744 WP_026590155.1 DUF3967 domain-containing protein -
  QRY57_RS19810 (QRY57_19815) - 3547384..3548658 (-) 1275 WP_026590154.1 HAMP domain-containing sensor histidine kinase -
  QRY57_RS19815 (QRY57_19820) - 3548968..3549168 (+) 201 WP_026590153.1 hypothetical protein -
  QRY57_RS19820 (QRY57_19825) - 3549269..3550432 (+) 1164 WP_286015922.1 aminotransferase A -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16056.54 Da        Isoelectric Point: 9.6677

>NTDB_id=843790 QRY57_RS19800 WP_286015921.1 3545734..3546168(-) (nucA/comI) [Bacillus arachidis strain YX15]
MKQIKGIIISIIAILSILVAVYEVFSPTESKSKKEVTYDQVLEFPKERYPETGKHIADAIKAGHSKVCTIDRNGAADRRK
LSLAPYPAKKGYDRDEWPMAMCKEGGKDAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFVVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=843790 QRY57_RS19800 WP_286015921.1 3545734..3546168(-) (nucA/comI) [Bacillus arachidis strain YX15]
ATGAAACAAATAAAAGGTATTATCATTTCAATTATTGCGATTCTTTCTATTTTGGTTGCTGTATATGAAGTATTTTCACC
TACAGAATCAAAGAGCAAGAAAGAAGTTACATATGATCAAGTTTTAGAATTTCCAAAAGAACGCTATCCCGAGACAGGGA
AACATATTGCAGATGCGATCAAAGCAGGACATTCTAAAGTGTGTACGATTGATCGAAATGGTGCAGCTGATAGAAGAAAG
TTGTCTCTAGCTCCATATCCAGCAAAAAAAGGATATGATCGTGATGAATGGCCAATGGCAATGTGTAAAGAAGGAGGAAA
AGATGCACATATTGAATATATTAGTCCAGCTGATAATAGAGGGGCTGGTTCTTGGGTTGGAAATAAGTTAGACAAATATC
CGGATGGTACTCGTGTGAAATTTGTAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.333

83.333

0.528