Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QRY57_RS08195 Genome accession   NZ_CP127376
Coordinates   1322482..1322805 (-) Length   107 a.a.
NCBI ID   WP_026591408.1    Uniprot ID   A0A1H3PHY7
Organism   Bacillus arachidis strain YX15     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1317482..1327805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS08165 (QRY57_08170) - 1318454..1319029 (+) 576 WP_026591412.1 signal peptidase I SipW -
  QRY57_RS08170 (QRY57_08175) - 1319091..1319678 (+) 588 WP_208016720.1 TasA family protein -
  QRY57_RS08175 (QRY57_08180) - 1319860..1320636 (+) 777 WP_286017165.1 DUF4047 domain-containing protein -
  QRY57_RS08180 (QRY57_08185) - 1320724..1320807 (+) 84 Protein_1199 TasA family protein -
  QRY57_RS08185 (QRY57_08190) - 1320920..1321576 (+) 657 WP_286017166.1 TasA family protein -
  QRY57_RS08190 (QRY57_08195) calY 1321791..1322384 (+) 594 WP_026591409.1 biofilm matrix protein CalY -
  QRY57_RS08195 (QRY57_08200) sinR 1322482..1322805 (-) 324 WP_026591408.1 helix-turn-helix domain-containing protein Regulator
  QRY57_RS08200 (QRY57_08205) - 1322896..1323027 (-) 132 WP_026591407.1 anti-repressor SinI family protein -
  QRY57_RS08205 (QRY57_08210) - 1323393..1325780 (+) 2388 WP_286017167.1 immune inhibitor A domain-containing protein -
  QRY57_RS08210 (QRY57_08215) - 1326005..1327372 (+) 1368 WP_286017168.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12433.25 Da        Isoelectric Point: 9.6552

>NTDB_id=843779 QRY57_RS08195 WP_026591408.1 1322482..1322805(-) (sinR) [Bacillus arachidis strain YX15]
MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQVPMDTLLHDETSSENQLDSEWTHLV
KEAMNSGVSKEQFREFLEFTKWKKNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=843779 QRY57_RS08195 WP_026591408.1 1322482..1322805(-) (sinR) [Bacillus arachidis strain YX15]
ATGATAGGAGAACGTATAAAACGCCTTCGGTTGCAAAGAGGGATTTCTTTAACAGAACTTGCTGAAAAAGCAGGTGTGGC
AAAGTCTTATATTAGTTCCATTGAACGTAATTTGCAAAAGAACCCTTCCATTCAATTTCTTGAAAAAATCGCAAATGTTC
TGCAAGTACCAATGGATACACTCCTTCATGACGAAACATCATCCGAAAACCAACTGGATTCGGAATGGACACACCTCGTC
AAAGAAGCTATGAATTCCGGTGTCTCAAAAGAGCAATTCCGGGAATTTTTAGAGTTTACAAAATGGAAGAAAAACCAGAA
GTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H3PHY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682