Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QRY57_RS07675 Genome accession   NZ_CP127376
Coordinates   1223632..1225458 (+) Length   608 a.a.
NCBI ID   WP_286017109.1    Uniprot ID   -
Organism   Bacillus arachidis strain YX15     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1218632..1230458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS07655 (QRY57_07660) - 1218916..1219587 (-) 672 WP_208017822.1 TerC family protein -
  QRY57_RS07660 (QRY57_07665) mecA 1219944..1220621 (+) 678 WP_208017823.1 adaptor protein MecA Regulator
  QRY57_RS07665 (QRY57_07670) cls 1220701..1222245 (+) 1545 WP_090693262.1 cardiolipin synthase -
  QRY57_RS07670 (QRY57_07675) - 1222343..1223584 (+) 1242 WP_286017819.1 competence protein CoiA family protein -
  QRY57_RS07675 (QRY57_07680) pepF 1223632..1225458 (+) 1827 WP_286017109.1 oligoendopeptidase F Regulator
  QRY57_RS07680 (QRY57_07685) - 1225662..1225934 (-) 273 WP_286017820.1 hypothetical protein -
  QRY57_RS07685 (QRY57_07690) - 1226701..1227594 (-) 894 WP_026590439.1 ClpXP adapter SpxH family protein -
  QRY57_RS07690 (QRY57_07695) - 1227594..1227992 (-) 399 WP_026590438.1 globin -
  QRY57_RS07695 (QRY57_07700) - 1228194..1228772 (-) 579 WP_090693251.1 CYTH domain-containing protein -
  QRY57_RS07700 (QRY57_07705) - 1228917..1229288 (+) 372 WP_026590436.1 hypothetical protein -
  QRY57_RS07705 (QRY57_07710) - 1229319..1229957 (+) 639 WP_026590435.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70234.75 Da        Isoelectric Point: 4.7203

>NTDB_id=843778 QRY57_RS07675 WP_286017109.1 1223632..1225458(+) (pepF) [Bacillus arachidis strain YX15]
MADQKTAKALPDRSEIEEMNTWRLEDIFQTDEEWEKEFQAVKELLPKLAEFKGKLGDSADSLLAALQYEDEVSMRLEKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQAASSTAYIVPEILTIAEEKLQSFLQENKELSVYEHALEEITRQRPHVLSEA
EEALLAEASEVLNASSNTFGMLNNADLKFPSIKDENGEEVEVTHGRYIQFLESDDPRVRHDAFHAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPETVYDQLVKTVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDILLKSLNVLGDEYVEILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKIQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNYYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDKEIGIEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEGK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=843778 QRY57_RS07675 WP_286017109.1 1223632..1225458(+) (pepF) [Bacillus arachidis strain YX15]
ATGGCTGATCAAAAAACAGCAAAAGCATTGCCGGACCGTAGTGAGATTGAGGAAATGAACACATGGCGCTTGGAAGATAT
TTTCCAAACGGATGAAGAATGGGAAAAAGAATTTCAAGCAGTGAAAGAGTTATTGCCGAAGTTAGCTGAATTTAAAGGGA
AACTAGGTGATTCTGCTGATTCATTATTAGCGGCTTTACAGTATGAAGATGAAGTTTCGATGAGATTAGAAAAATTATAT
ACATATGCTCATATGCGTTACGATCAAGATACAACAAATTCTGTTTATCAAGCGTTAAATGATCGTGCAACCAACTTATA
TTCTCAAGCTGCCAGCAGCACGGCGTATATCGTTCCTGAAATTTTAACAATTGCAGAAGAAAAGTTACAATCCTTCTTAC
AAGAAAACAAAGAATTAAGTGTATATGAACATGCGTTAGAAGAAATTACACGTCAGCGTCCACACGTACTATCAGAAGCT
GAAGAAGCATTGTTAGCTGAAGCATCTGAAGTCCTGAATGCATCAAGTAATACATTTGGTATGCTTAATAATGCAGACTT
GAAATTCCCATCTATTAAAGATGAGAATGGTGAAGAAGTAGAAGTAACACACGGTCGTTATATTCAATTTTTAGAAAGTG
ATGATCCTCGTGTTCGTCATGATGCATTCCATGCAGTGTATGAAACGTATGGGAAATATAAAAATACATTTGCAAGTACA
CTCAGCGGTGCGGTAAAACGCAATAATTTTAATGCGCGCGTTCGTAAATATGATTCGGCACGTCAAGCTGCGTTAAGCAA
TAATAACATTCCTGAAACAGTATATGACCAGCTTGTTAAGACGGTAAATGATAACTTACATTTATTGCACCGATATATTG
ACATTCGTAAACGTGCATTAGGTCTTGATGAATTGCATATGTACGATTTATATACACCGCTTGTACCAGAAGTGAAAATG
AATGTGAAATATGAAGAAGCACAAGACATTCTACTCAAGTCATTAAACGTCCTTGGGGATGAGTATGTTGAAATTTTGAA
AGAAGCATATGAAAACCGCTGGGTAGACGTGTATGAAAACAAAGGAAAACGAAGCGGTGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCACGATAATGTAAACAATTTATTTACACTTGCACATGAGTTTGGTCATTCT
GTGCATAGCTACTATACAAGAAAAATACAACCACATGTTTATGGTGACTATTCAATCTTCGTTGCAGAAGTTGCATCAAC
TTGTAACGAAGCACTTTTAAATGATTATTTACTAAAAACGACAGAAGATAAGAAAGAGCGTTTATATTTACTAAATTATT
ATTTAGAGGGATTCCGTGGAACTGTATTCCGTCAAACGATGTTTGCTGAATTCGAGCACATCATTCATAAAAAAGTGCAA
GAAGGTCATGCAGTAACGCCAGATATGTTAACGGAAATTTACTATGATTTAAATAAAAAATACTTTGGCGATGCTTTAGT
CATCGATAAAGAAATTGGTATAGAGTGGTCTCGTATTCCGCACTTCTATTACAACTATTATGTATATCAATATGCAACAG
GATTTAGTGCGGCAACAGCTTTATCAAAACAAATTTTAGAAGAAGGACAACCAGCTGTAGAGCGTTATATTAATGAATTC
TTAAAAGCTGGAAGCTCCGATTATCCAATTGAAGTACTGAAAAAAGCAGGAGTAGACATGGCGTCTCCAGAGCCTGTTAA
AGAAGCACTTCAAGTATTTGAAGAAAAGTTAAATGAATTAGAAGCATTATTATTTGAAGGGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.497

98.026

0.485