Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QRY57_RS01655 Genome accession   NZ_CP127376
Coordinates   3017..4144 (+) Length   375 a.a.
NCBI ID   WP_208016696.1    Uniprot ID   -
Organism   Bacillus arachidis strain YX15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY57_RS01640 (QRY57_01645) dnaA 1..1341 (+) 1341 WP_208016694.1 chromosomal replication initiator protein DnaA -
  QRY57_RS01645 (QRY57_01650) dnaN 1519..2664 (+) 1146 WP_286016559.1 DNA polymerase III subunit beta -
  QRY57_RS01650 (QRY57_01655) yaaA 2792..3004 (+) 213 WP_011983150.1 S4 domain-containing protein YaaA -
  QRY57_RS01655 (QRY57_01660) recF 3017..4144 (+) 1128 WP_208016696.1 DNA replication/repair protein RecF Machinery gene
  QRY57_RS01660 (QRY57_01665) gyrB 4183..6105 (+) 1923 WP_208016697.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QRY57_RS01665 (QRY57_01670) gyrA 6194..8665 (+) 2472 WP_286016560.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43463.82 Da        Isoelectric Point: 7.1871

>NTDB_id=843762 QRY57_RS01655 WP_208016696.1 3017..4144(+) (recF) [Bacillus arachidis strain YX15]
MYITELQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEEYGKIKGRLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILQKRFEFLKLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKQAKTIHVKSGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=843762 QRY57_RS01655 WP_208016696.1 3017..4144(+) (recF) [Bacillus arachidis strain YX15]
TTGTATATTACAGAATTACAATTAAAAAATTATCGCAATTATGAATATCTAGATCTTTCCTTTGAGGATAAAGTGAATGT
AATTATTGGTGAAAACGCCCAGGGGAAAACGAATTTGATGGAAGCTATTTATGTATTAGCGATGGCCAAATCTCATCGAA
CTTCGAACGATCGTGAACTTATCCGGTGGGATGAGGAGTATGGTAAAATAAAAGGTAGATTACAAAAACGAAATAGTTCT
TTGTCTTTAGAATTAAATATTTCTAAAAAAGGCAAAAAGGCAAAATTAAACCAACTAGAACAACAAAAGTTGAGCCAATA
CATTGGTGAAATGAATGTTGTTATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTACGAAGACGCT
TTTTAGATATGGAACTTGGACAAATAGCACCTGTCTATTTGTATGAATTAAGTCAATATCAAAAAGTGCTCACGCAGCGA
AATCACTTGCTAAAAAAAATGCAAGGGAATAGTAAAAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTCATTGA
ACATGGTACGAAAATTTTACAAAAACGTTTTGAGTTTTTGAAATTACTACAAGAATGGGCTGCTCCAATCCATCGTGGTA
TTAGTAGAGGATTAGAGGAGTTAGAAATAGTCTATAAGCCGAGCGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAGTCTGTGAAACAACGTGAAATTTTCCGTGGTACAACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACAACCGCACTTT
CCCTAAAGTTAGCTGAAATTGAATTGATTTATTCAGAGGTGAAAGAATACCCAATCCTCTTATTAGATGATGTATTATCA
GAGTTAGATGATTATCGTCAATCGCATCTCTTAAATACAATTCAGGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAGCAAGCGAAAACAATTCATGTAAAAAGCGGCACGGTAGATTGTGAAATAGACA
GAGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.12

98.133

0.659