Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QAB28_RS09175 Genome accession   NZ_CP143645
Coordinates   1956083..1956688 (+) Length   201 a.a.
NCBI ID   WP_003091706.1    Uniprot ID   A0A0H2ZDR8
Organism   Pseudomonas aeruginosa strain CPO100     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1951083..1961688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAB28_RS09175 (QAB28_009175) clpP 1956083..1956688 (+) 606 WP_003091706.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QAB28_RS09180 (QAB28_009180) - 1957032..1957919 (-) 888 WP_003113144.1 metal-dependent hydrolase -
  QAB28_RS09185 (QAB28_009185) - 1957929..1959707 (-) 1779 WP_015649226.1 SDR family oxidoreductase -
  QAB28_RS09190 (QAB28_009190) - 1959704..1960579 (-) 876 WP_003091703.1 M24 family metallopeptidase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22142.22 Da        Isoelectric Point: 5.3571

>NTDB_id=843759 QAB28_RS09175 WP_003091706.1 1956083..1956688(+) (clpP) [Pseudomonas aeruginosa strain CPO100]
MKTDDKDREGGDSHGAIGAKLMEYALKVRKVFVTGGVDEKMAKDVVQQLHILASISDDPIYMFVNSPGGHVESGDMIFDA
IRFITPKVIMIGSGSVASAGALIYAAADKENRYSLPNTRFLLHQPSGGIQGPASNIEIYRREIVRMKERLDRIFAEATGQ
TPEKISADTERDFWLNAEEAVQYGLVNKIIVSEREITLPGQ

Nucleotide


Download         Length: 606 bp        

>NTDB_id=843759 QAB28_RS09175 WP_003091706.1 1956083..1956688(+) (clpP) [Pseudomonas aeruginosa strain CPO100]
ATGAAAACCGATGACAAGGACCGCGAAGGCGGCGACTCCCACGGCGCCATCGGCGCCAAGCTGATGGAGTACGCGCTCAA
GGTCAGGAAGGTGTTCGTCACCGGCGGGGTTGACGAGAAGATGGCCAAGGACGTCGTCCAGCAGCTGCACATCCTCGCCT
CGATCAGCGACGATCCGATCTACATGTTCGTCAATTCCCCGGGTGGCCACGTCGAATCCGGCGACATGATCTTCGACGCG
ATCCGCTTCATCACACCGAAGGTCATCATGATCGGTTCCGGCAGCGTTGCCAGCGCCGGCGCGCTGATCTATGCCGCGGC
GGACAAGGAAAACCGCTATTCGCTGCCCAATACCCGCTTCCTCCTGCACCAGCCGTCGGGCGGCATCCAGGGGCCGGCGA
GCAATATCGAGATCTACCGCCGCGAGATCGTGCGGATGAAGGAACGCCTCGACCGGATCTTCGCCGAAGCCACCGGGCAG
ACGCCGGAAAAGATCAGCGCCGACACCGAGCGCGACTTCTGGCTGAACGCGGAGGAGGCCGTGCAGTACGGCCTGGTCAA
TAAGATCATCGTTTCGGAACGGGAGATCACGCTGCCTGGCCAGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(19-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

43.195

84.08

0.363