Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   QAB28_RS02485 Genome accession   NZ_CP143645
Coordinates   525115..525480 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain CPO100     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 520115..530480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAB28_RS02455 (QAB28_002455) pyrR 520737..521249 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  QAB28_RS02460 (QAB28_002460) ruvX 521361..521795 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  QAB28_RS02465 (QAB28_002465) - 521795..522364 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  QAB28_RS02470 (QAB28_002470) - 522413..523306 (-) 894 WP_015649761.1 energy transducer TonB -
  QAB28_RS02475 (QAB28_002475) gshB 523453..524406 (-) 954 WP_003100943.1 glutathione synthase -
  QAB28_RS02480 (QAB28_002480) pilG 524661..525068 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  QAB28_RS02485 (QAB28_002485) pilH 525115..525480 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  QAB28_RS02490 (QAB28_002490) - 525531..526067 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  QAB28_RS02495 (QAB28_002495) pilJ 526152..528200 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  QAB28_RS02500 (QAB28_002500) pilK 528261..529136 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=843743 QAB28_RS02485 WP_003084587.1 525115..525480(+) (pilH) [Pseudomonas aeruginosa strain CPO100]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=843743 QAB28_RS02485 WP_003084587.1 525115..525480(+) (pilH) [Pseudomonas aeruginosa strain CPO100]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGATGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364