Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   V1232_RS30260 Genome accession   NZ_CP143357
Coordinates   6417690..6418415 (+) Length   241 a.a.
NCBI ID   WP_031693667.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2023CK-01621     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6412690..6423415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1232_RS30230 (V1232_30230) - 6412810..6413688 (-) 879 WP_023081616.1 5-oxoprolinase subunit B family protein -
  V1232_RS30235 (V1232_30235) - 6413690..6415066 (-) 1377 WP_023435401.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  V1232_RS30240 (V1232_30240) - 6415077..6415325 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  V1232_RS30245 (V1232_30245) - 6415402..6416160 (-) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  V1232_RS30250 (V1232_30250) - 6416278..6417204 (+) 927 WP_023435400.1 LysR family transcriptional regulator -
  V1232_RS30255 (V1232_30255) - 6417258..6417551 (+) 294 WP_003084806.1 hypothetical protein -
  V1232_RS30260 (V1232_30260) comF 6417690..6418415 (+) 726 WP_031693667.1 ComF family protein Machinery gene
  V1232_RS30265 (V1232_30265) - 6418457..6418777 (+) 321 WP_003129064.1 YfiM family lipoprotein -
  V1232_RS30270 (V1232_30270) - 6418845..6419603 (+) 759 WP_012613518.1 TOBE domain-containing protein -
  V1232_RS30275 (V1232_30275) - 6419665..6420639 (+) 975 WP_003084794.1 serine/threonine protein kinase -
  V1232_RS30280 (V1232_30280) rarD 6420842..6421738 (+) 897 WP_003103301.1 EamA family transporter RarD -
  V1232_RS30285 (V1232_30285) - 6422428..6422943 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26948.47 Da        Isoelectric Point: 10.8088

>NTDB_id=843646 V1232_RS30260 WP_031693667.1 6417690..6418415(+) (comF) [Pseudomonas aeruginosa strain 2023CK-01621]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYTEGLPPPARLLPVPLAPRRERRRGFNQAQQLAERLAGELGLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=843646 V1232_RS30260 WP_031693667.1 6417690..6418415(+) (comF) [Pseudomonas aeruginosa strain 2023CK-01621]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCATGGTCGCGCCAGCAGTGTCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGCTGCT
GGCGGAACACCTGCGGCAACGCTACACCGAAGGCCTGCCGCCCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGGCCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

37.5

99.585

0.373
  comFC Legionella pneumophila str. Paris

37.826

95.436

0.361