Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QMG71_RS19690 Genome accession   NZ_AP027176
Coordinates   3753693..3754208 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain EH2252     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3748693..3759208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG71_RS19665 (EH2252_3764) ygaZ 3749092..3749829 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  QMG71_RS19670 (EH2252_3765) ygaH 3749819..3750154 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  QMG71_RS19675 (EH2252_3766) emrR 3750245..3750775 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QMG71_RS19680 (EH2252_3767) emrA 3750902..3752074 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QMG71_RS19685 (EH2252_3768) emrB 3752091..3753629 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QMG71_RS19690 (EH2252_3769) luxS 3753693..3754208 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  QMG71_RS19695 (EH2252_3770) gshA 3754358..3755914 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  QMG71_RS19700 (EH2252_3771) yqaA 3755987..3756415 (-) 429 WP_001287457.1 YqaA family protein -
  QMG71_RS19705 (EH2252_3772) yqaB 3756412..3756978 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QMG71_RS19735 (EH2252_3773) csrA 3758303..3758488 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=84363 QMG71_RS19690 WP_001130207.1 3753693..3754208(-) (luxS) [Escherichia coli strain EH2252]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=84363 QMG71_RS19690 WP_001130207.1 3753693..3754208(-) (luxS) [Escherichia coli strain EH2252]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment