Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   V1232_RS21970 Genome accession   NZ_CP143357
Coordinates   4697182..4697538 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain 2023CK-01621     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4692182..4702538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1232_RS21945 (V1232_21945) - 4692548..4693180 (-) 633 WP_003091112.1 DUF4823 domain-containing protein -
  V1232_RS21950 (V1232_21950) - 4693245..4694141 (-) 897 WP_023115235.1 radical SAM protein -
  V1232_RS21955 (V1232_21955) - 4694308..4694946 (-) 639 WP_023091594.1 TetR/AcrR family transcriptional regulator -
  V1232_RS21960 (V1232_21960) - 4695032..4696165 (+) 1134 WP_023106226.1 aminotransferase class V-fold PLP-dependent enzyme -
  V1232_RS21965 (V1232_21965) - 4696391..4697167 (-) 777 WP_003091117.1 TatD family hydrolase -
  V1232_RS21970 (V1232_21970) pilZ 4697182..4697538 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  V1232_RS21975 (V1232_21975) - 4697572..4698558 (-) 987 WP_003110200.1 DNA polymerase III subunit delta' -
  V1232_RS21980 (V1232_21980) tmk 4698551..4699183 (-) 633 WP_003122486.1 dTMP kinase -
  V1232_RS21985 (V1232_21985) mltG 4699212..4700261 (-) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  V1232_RS21990 (V1232_21990) pabC 4700267..4701082 (-) 816 WP_003110198.1 aminodeoxychorismate lyase -
  V1232_RS21995 (V1232_21995) fabF 4701082..4702326 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=843624 V1232_RS21970 WP_003091119.1 4697182..4697538(-) (pilZ) [Pseudomonas aeruginosa strain 2023CK-01621]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=843624 V1232_RS21970 WP_003091119.1 4697182..4697538(-) (pilZ) [Pseudomonas aeruginosa strain 2023CK-01621]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTTTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCTCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449