Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QRA12_RS00200 Genome accession   NZ_CP127345
Coordinates   41183..41578 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 36183..46578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA12_RS00175 (QRA12_00175) thiE 36783..37424 (-) 642 WP_000483156.1 thiamine phosphate synthase -
  QRA12_RS00180 (QRA12_00180) thiM 37426..38217 (-) 792 WP_001108482.1 hydroxyethylthiazole kinase -
  QRA12_RS00185 (QRA12_00185) thiD 38201..39031 (-) 831 WP_406707318.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QRA12_RS00190 (QRA12_00190) tenA 39024..39713 (-) 690 WP_000396067.1 thiaminase II -
  QRA12_RS00195 (QRA12_00195) sceD 40099..40794 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  QRA12_RS00200 (QRA12_00200) ssb 41183..41578 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QRA12_RS00205 (QRA12_00205) - 41772..42212 (+) 441 WP_000846746.1 YwpF-like family protein -
  QRA12_RS00210 (QRA12_00210) fabZ 42270..42710 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QRA12_RS00215 (QRA12_00215) murA 42744..44009 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QRA12_RS00220 (QRA12_00220) - 44120..44353 (-) 234 WP_000384523.1 DUF1146 family protein -
  QRA12_RS00225 (QRA12_00225) - 44485..44577 (-) 93 WP_001790611.1 hypothetical protein -
  QRA12_RS00230 (QRA12_00230) - 44972..45376 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=843624 QRA12_RS00200 WP_000932694.1 41183..41578(-) (ssb) [Staphylococcus aureus strain MRSA11]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=843624 QRA12_RS00200 WP_000932694.1 41183..41578(-) (ssb) [Staphylococcus aureus strain MRSA11]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992