Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRA08_RS08640 Genome accession   NZ_CP127331
Coordinates   1646162..1646446 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain BC116     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1641162..1651446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA08_RS08605 (QRA08_08580) tmk 1641354..1641980 (+) 627 WP_406653994.1 dTMP kinase -
  QRA08_RS08610 (QRA08_08585) holB 1642016..1642999 (+) 984 WP_406653996.1 DNA polymerase III subunit delta' -
  QRA08_RS08615 (QRA08_08590) - 1643005..1643832 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  QRA08_RS08620 (QRA08_08595) yabA 1643847..1644197 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  QRA08_RS08625 (QRA08_08600) - 1644280..1645020 (+) 741 WP_001055355.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QRA08_RS08630 (QRA08_08605) - 1645007..1645297 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  QRA08_RS08635 (QRA08_08610) rsmI 1645266..1646141 (+) 876 WP_000267824.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QRA08_RS08640 (QRA08_08615) abrB 1646162..1646446 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRA08_RS08645 (QRA08_08620) metG 1646934..1648916 (+) 1983 WP_000134131.1 methionine--tRNA ligase -
  QRA08_RS08650 (QRA08_08625) - 1649083..1649850 (+) 768 WP_000895840.1 TatD family hydrolase -
  QRA08_RS08655 (QRA08_08630) rnmV 1650066..1650623 (+) 558 WP_000692837.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=843478 QRA08_RS08640 WP_000843036.1 1646162..1646446(-) (abrB) [Bacillus cereus strain BC116]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=843478 QRA08_RS08640 WP_000843036.1 1646162..1646446(-) (abrB) [Bacillus cereus strain BC116]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851