Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QRA08_RS08440 Genome accession   NZ_CP127331
Coordinates   1608846..1609973 (+) Length   375 a.a.
NCBI ID   WP_406653988.1    Uniprot ID   -
Organism   Bacillus cereus strain BC116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1603846..1614973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA08_RS08410 (QRA08_08385) spoIIIJ 1603886..1604653 (-) 768 WP_000727740.1 YidC family membrane integrase SpoIIIJ -
  QRA08_RS08415 (QRA08_08390) rnpA 1604706..1605053 (-) 348 WP_000726621.1 ribonuclease P protein component -
  QRA08_RS08420 (QRA08_08395) rpmH 1605130..1605264 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  QRA08_RS08425 (QRA08_08400) dnaA 1605829..1607169 (+) 1341 WP_406653985.1 chromosomal replication initiator protein DnaA -
  QRA08_RS08430 (QRA08_08405) dnaN 1607348..1608493 (+) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  QRA08_RS08435 (QRA08_08410) yaaA 1608621..1608833 (+) 213 WP_000680510.1 S4 domain-containing protein YaaA -
  QRA08_RS08440 (QRA08_08415) recF 1608846..1609973 (+) 1128 WP_406653988.1 DNA replication/repair protein RecF Machinery gene
  QRA08_RS08445 (QRA08_08420) gyrB 1610013..1611935 (+) 1923 WP_000435980.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QRA08_RS08450 (QRA08_08425) gyrA 1612024..1614495 (+) 2472 WP_001282866.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43322.66 Da        Isoelectric Point: 6.7809

>NTDB_id=843476 QRA08_RS08440 WP_406653988.1 1608846..1609973(+) (recF) [Bacillus cereus strain BC116]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEEFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKIMQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=843476 QRA08_RS08440 WP_406653988.1 1608846..1609973(+) (recF) [Bacillus cereus strain BC116]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAACTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGAGTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACCCTTCAACTAATTGA
GCATGGTGCAAAAATAATGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTAATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTACTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGATGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651