Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QRA08_RS06870 Genome accession   NZ_CP127331
Coordinates   1279340..1280689 (-) Length   449 a.a.
NCBI ID   WP_000879410.1    Uniprot ID   -
Organism   Bacillus cereus strain BC116     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1274340..1285689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA08_RS06835 (QRA08_06830) - 1274503..1275198 (-) 696 WP_406653846.1 hypothetical protein -
  QRA08_RS06840 (QRA08_06835) - 1275185..1275973 (-) 789 WP_000120050.1 hypothetical protein -
  QRA08_RS06845 (QRA08_06840) - 1276005..1276574 (-) 570 WP_001211060.1 hypothetical protein -
  QRA08_RS06850 (QRA08_06845) - 1276692..1277174 (-) 483 WP_000023374.1 hypothetical protein -
  QRA08_RS06855 (QRA08_06850) hpf 1277446..1277988 (-) 543 WP_000671189.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  QRA08_RS06860 (QRA08_06855) cspC 1278312..1278509 (-) 198 WP_001990088.1 cold shock protein CspC -
  QRA08_RS06865 (QRA08_06860) - 1278636..1279340 (-) 705 WP_406653849.1 ComF family protein -
  QRA08_RS06870 (QRA08_06865) comFA 1279340..1280689 (-) 1350 WP_000879410.1 ATP-dependent helicase ComFA Machinery gene
  QRA08_RS06875 (QRA08_06870) - 1280817..1282244 (-) 1428 WP_141493236.1 NlpC/P60 family protein -
  QRA08_RS06880 (QRA08_06875) - 1282393..1282707 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  QRA08_RS06885 (QRA08_06880) - 1282880..1283722 (-) 843 WP_000684727.1 DegV family protein -
  QRA08_RS06890 (QRA08_06885) - 1283959..1284594 (+) 636 WP_000926670.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51104.99 Da        Isoelectric Point: 10.0088

>NTDB_id=843470 QRA08_RS06870 WP_000879410.1 1279340..1280689(-) (comFA) [Bacillus cereus strain BC116]
MLAGKQLLLDELSSDLQRELNDLKKKGEVVCVQGVKKKASKYVCQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECALLVRGIAERKREKNLNLLRWSGTLSTGQNLAAQGVIEAIKRKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KERAARIYLTATPDETWKRKFRRGEQKGVIVSGRYHRHPLPVPLFCWCGNWKKSLIHKRIPRVLLQWLQTYLNKKYPIFL
FVPHVRYIEEISLLLKSLNKRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVVYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=843470 QRA08_RS06870 WP_000879410.1 1279340..1280689(-) (comFA) [Bacillus cereus strain BC116]
ATGCTAGCGGGGAAACAGTTGCTATTAGACGAACTTTCTTCAGATTTACAGAGGGAATTAAATGATTTGAAAAAGAAGGG
AGAGGTCGTCTGTGTACAGGGTGTAAAAAAGAAGGCTTCTAAATATGTATGTCAGCGCTGTGGAAATATAGAACAGCGGC
TATTTGCGTCGTTTTTATGTAAAAGATGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGGGTAAGT
GAATGTGCTTTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTTAAACTTGCTACGGTGGAGCGGAACGTT
GTCTACTGGTCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCGAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTGCAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCAACCACGCATCAATTATTGCGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAGAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAATTTAGAAGAGGTGAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCTTTGCCAGTTCCTTTGTTTTGTTGGTGCGGGAATTGGAAAAAAA
GCCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACGTACTTAAATAAAAAATATCCTATTTTTTTA
TTTGTTCCCCATGTGCGATATATAGAAGAGATAAGCCTGTTGTTAAAGTCATTAAACAAGCGAATTGAAGGTGTACATGC
AGAAGATCCGGGTAGAAAAGAAAAAGTAGCGGCTTTCAGAAAAGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACAGTAAAAAATTTGCAAGTAGCGGTTTTAGGGGCGGAAGAAGAAATATTCTCAGAAAGTGCACTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCGTTTATTTTCACTATGGTAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(108-254)

Helicase conserved C-terminal domain (Helicase_C)

(312-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.679

98.441

0.499
  comFA Latilactobacillus sakei subsp. sakei 23K

41.709

88.641

0.37