Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QRA08_RS02385 Genome accession   NZ_CP127331
Coordinates   433406..434152 (-) Length   248 a.a.
NCBI ID   WP_406653454.1    Uniprot ID   -
Organism   Bacillus cereus strain BC116     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 428406..439152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA08_RS02365 (QRA08_02360) dnaG 429167..430963 (-) 1797 WP_000528221.1 DNA primase -
  QRA08_RS02370 (QRA08_02365) - 431045..431188 (-) 144 WP_000479733.1 hypothetical protein -
  QRA08_RS02375 (QRA08_02370) - 431824..432636 (-) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  QRA08_RS02380 (QRA08_02375) - 432666..433298 (-) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  QRA08_RS02385 (QRA08_02380) recO 433406..434152 (-) 747 WP_406653454.1 DNA repair protein RecO Machinery gene
  QRA08_RS02390 (QRA08_02385) - 434186..434329 (-) 144 WP_000883924.1 YqzL family protein -
  QRA08_RS02395 (QRA08_02390) era 434506..435411 (-) 906 WP_001080230.1 GTPase Era -
  QRA08_RS02400 (QRA08_02395) - 435404..435802 (-) 399 WP_088022801.1 cytidine deaminase -
  QRA08_RS02405 (QRA08_02400) - 435902..436255 (-) 354 WP_000715464.1 diacylglycerol kinase family protein -
  QRA08_RS02410 (QRA08_02405) ybeY 436252..436722 (-) 471 WP_088022803.1 rRNA maturation RNase YbeY -
  QRA08_RS02415 (QRA08_02410) - 436719..438863 (-) 2145 WP_088022805.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28588.18 Da        Isoelectric Point: 8.0566

>NTDB_id=843460 QRA08_RS02385 WP_406653454.1 433406..434152(-) (recO) [Bacillus cereus strain BC116]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDGTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=843460 QRA08_RS02385 WP_406653454.1 433406..434152(-) (recO) [Bacillus cereus strain BC116]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTTATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTGTTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTAAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATGGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552