Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QRA07_RS18310 Genome accession   NZ_CP127321
Coordinates   3848531..3849943 (+) Length   470 a.a.
NCBI ID   WP_233735319.1    Uniprot ID   -
Organism   Acinetobacter pittii strain PC870     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3843531..3854943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS18290 (QRA07_18345) thrC 3843788..3844927 (+) 1140 WP_002048893.1 threonine synthase -
  QRA07_RS18295 (QRA07_18350) pbpG 3845034..3846080 (-) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  QRA07_RS18300 (QRA07_18355) gacA 3846293..3846928 (+) 636 WP_002121174.1 response regulator -
  QRA07_RS18305 (QRA07_18360) pilS 3846939..3848507 (+) 1569 WP_233735318.1 PAS domain-containing sensor histidine kinase Regulator
  QRA07_RS18310 (QRA07_18365) pilR 3848531..3849943 (+) 1413 WP_233735319.1 sigma-54 dependent transcriptional regulator Regulator
  QRA07_RS18315 (QRA07_18370) ctpA 3849947..3851131 (-) 1185 WP_233735320.1 S41 family peptidase -
  QRA07_RS18320 (QRA07_18375) gpmI 3851147..3852694 (-) 1548 WP_233735321.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  QRA07_RS18325 (QRA07_18380) lptG 3852821..3853891 (-) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52600.60 Da        Isoelectric Point: 6.3452

>NTDB_id=843430 QRA07_RS18310 WP_233735319.1 3848531..3849943(+) (pilR) [Acinetobacter pittii strain PC870]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKSEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPLRGSSVSPQIVTKQLN
QTPAVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=843430 QRA07_RS18310 WP_233735319.1 3848531..3849943(+) (pilR) [Acinetobacter pittii strain PC870]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTTTTTACTCAGTTTCATTACGATGCATGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGTTTAGAATTGGTTCAACATGTTTCTCAAACTTACCCACACACTCCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
TATTAACCAAATTCACTTAGATCAATTGTTAAAAAAGGCGCTCAACCAGCCAAAATCAGAGCATGAGTTCGGTGAAACAA
CATTAGAAAATGACTTATTAATTGGGCGTTCGCCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAGTCTGGTACGGGTAAAGAAGTTGTTGCTAATCTGATTCACCGATTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTTGGGCATAAAA
AAGGGAGCTTTACTGGTGCGACTCAAGACAAACAAGGTCTGATTTTATCGGCACATGGCGGTAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGCGCAGTACAAGAGAAAAAGATTCGCCCAGTAGGTTCAGA
TCAGGAAATTGATGTCGATTTTCGAGTAATCAGTGCCAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAAGACTTATTTTTCCGTATTCATGTTATGGATATTATGCTGCCGCCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAGACTTA
CTTATTGCAGCAAGACTTCCCGGGTAACGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCGCCTCCTCTTAGAGGCAGTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGGCTGTTCAGACTCACCCAAAATTTCCAATGGAGGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTATTGAATGCGCTAAACATGACGCATTGGAATCGAACTTTGGCGGCTAAAAAGTTAGGAATGACATTCCGTTCTTTGC
GCTATCGACTCAAAAAGTTTGGCTTAGATACTGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.047

100

0.866
  pilR Pseudomonas aeruginosa PAK

50.877

97.021

0.494