Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   QRA07_RS18150 Genome accession   NZ_CP127321
Coordinates   3815922..3816248 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain PC870     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3810922..3821248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS18130 (QRA07_18180) - 3811029..3811655 (-) 627 WP_005065779.1 FHA domain-containing protein -
  QRA07_RS18135 (QRA07_18185) gspD 3811696..3813966 (-) 2271 WP_233735306.1 type II secretion system secretin GspD -
  QRA07_RS18140 (QRA07_18190) - 3814008..3814844 (-) 837 WP_005079413.1 type II secretion system protein N -
  QRA07_RS18145 (QRA07_18195) gspN 3814844..3815587 (-) 744 WP_002121195.1 type II secretion system protein N -
  QRA07_RS18150 (QRA07_18200) hns 3815922..3816248 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  QRA07_RS18155 (QRA07_18205) - 3816443..3816883 (-) 441 WP_002121251.1 thioesterase family protein -
  QRA07_RS18160 (QRA07_18210) - 3816891..3818084 (-) 1194 WP_233735307.1 heme biosynthesis protein HemY -
  QRA07_RS18165 (QRA07_18215) - 3818094..3818936 (-) 843 WP_032006827.1 hypothetical protein -
  QRA07_RS18170 (QRA07_18220) hemD 3818945..3819712 (-) 768 WP_233735308.1 uroporphyrinogen-III synthase -
  QRA07_RS18175 (QRA07_18225) hemC 3819716..3820633 (-) 918 WP_199114149.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=843427 QRA07_RS18150 WP_000801427.1 3815922..3816248(-) (hns) [Acinetobacter pittii strain PC870]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=843427 QRA07_RS18150 WP_000801427.1 3815922..3816248(-) (hns) [Acinetobacter pittii strain PC870]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1