Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QRA07_RS17840 Genome accession   NZ_CP127321
Coordinates   3753591..3754817 (+) Length   408 a.a.
NCBI ID   WP_005079343.1    Uniprot ID   A0A009R5F8
Organism   Acinetobacter pittii strain PC870     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3748591..3759817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS17805 (QRA07_17850) rimP 3749262..3749786 (-) 525 WP_002114922.1 ribosome maturation factor RimP -
  QRA07_RS17825 (QRA07_17870) secG 3750424..3750753 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  QRA07_RS17830 (QRA07_17875) tpiA 3750766..3751560 (-) 795 WP_233734156.1 triose-phosphate isomerase -
  QRA07_RS17835 (QRA07_17880) pilB 3751852..3753564 (+) 1713 WP_078224392.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QRA07_RS17840 (QRA07_17885) pilC 3753591..3754817 (+) 1227 WP_005079343.1 type II secretion system F family protein Machinery gene
  QRA07_RS17845 (QRA07_17890) pilD 3754817..3755677 (+) 861 WP_002114758.1 A24 family peptidase Machinery gene
  QRA07_RS17850 (QRA07_17895) coaE 3755679..3756275 (+) 597 WP_005065869.1 dephospho-CoA kinase -
  QRA07_RS17855 (QRA07_17900) - 3756272..3757186 (-) 915 WP_032063689.1 DMT family transporter -
  QRA07_RS17860 (QRA07_17905) rlmB 3757222..3757971 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QRA07_RS17865 (QRA07_17910) - 3758074..3758400 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  QRA07_RS17870 (QRA07_17915) - 3758477..3759787 (-) 1311 WP_005065861.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45027.45 Da        Isoelectric Point: 9.8207

>NTDB_id=843425 QRA07_RS17840 WP_005079343.1 3753591..3754817(+) (pilC) [Acinetobacter pittii strain PC870]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=843425 QRA07_RS17840 WP_005079343.1 3753591..3754817(+) (pilC) [Acinetobacter pittii strain PC870]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTGTTCAAGAAGAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACC
ATGATGAAAGCTGGTGTCCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATCAAAAAAGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACTATTATTTTGATGGTTAAAGTAGTGCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGATTAGATAAACTTACACTGAAACTACCTATCTTTGG
CGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCAGTCATGAAAATTCGTGAAGATGTAGCT
ACAGGCCAACAACTTCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCTACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGAGTGCTCGTAGGTGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009R5F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.794

100

0.978
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365