Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   QRA07_RS03335 Genome accession   NZ_CP127321
Coordinates   684566..685450 (+) Length   294 a.a.
NCBI ID   WP_233735413.1    Uniprot ID   -
Organism   Acinetobacter pittii strain PC870     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 679566..690450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA07_RS03310 (QRA07_03305) - 679880..681127 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  QRA07_RS03315 (QRA07_03310) wrbA 681488..682090 (+) 603 WP_005078299.1 NAD(P)H:quinone oxidoreductase -
  QRA07_RS03320 (QRA07_03315) xpt 682142..682717 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  QRA07_RS03325 (QRA07_03320) - 682790..683503 (-) 714 WP_002119525.1 DUF3108 domain-containing protein -
  QRA07_RS03330 (QRA07_03325) - 683662..684333 (-) 672 WP_014207723.1 hypothetical protein -
  QRA07_RS03335 (QRA07_03330) tonB2 684566..685450 (+) 885 WP_233735413.1 energy transducer TonB Machinery gene
  QRA07_RS03340 (QRA07_03335) ybeY 685503..685979 (-) 477 WP_032038724.1 rRNA maturation RNase YbeY -
  QRA07_RS03345 (QRA07_03340) phoL 685989..687077 (-) 1089 WP_002119513.1 PhoH family protein -
  QRA07_RS03350 (QRA07_03345) miaB 687115..688566 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33605.14 Da        Isoelectric Point: 7.2040

>NTDB_id=843404 QRA07_RS03335 WP_233735413.1 684566..685450(+) (tonB2) [Acinetobacter pittii strain PC870]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVVQADFLAQADQQGSGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKSSVRRGAPFGHFDTNMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=843404 QRA07_RS03335 WP_233735413.1 684566..685450(+) (tonB2) [Acinetobacter pittii strain PC870]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTGTTGCTCATTCACTTTGCTATGCCTAGCCCGTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTGTTCAGGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATACAGCAGCAAAGAGAACTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAATTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCGATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATTAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCGGCTGCTTATTTGGATAAGTTCCGTGAAAAAGTAGAGCTTTATGGCAACCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTAATTTTGAATGCTCAAGGCGGAATTCGTGCAATTCGCTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TACCAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

89.116

100

0.891