Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VZW04_RS08390 Genome accession   NZ_CP143092
Coordinates   1761291..1762718 (-) Length   475 a.a.
NCBI ID   WP_000980600.1    Uniprot ID   -
Organism   Escherichia coli strain EC190486     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1756291..1767718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZW04_RS08360 (VZW04_08360) yeeZ 1756346..1757170 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  VZW04_RS08365 (VZW04_08365) yeeY 1757216..1758145 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  VZW04_RS08370 (VZW04_08370) yoeI 1758360..1758422 (+) 63 WP_010723108.1 membrane protein YoeI -
  VZW04_RS08375 (VZW04_08375) plaP 1758412..1759770 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  VZW04_RS08380 (VZW04_08380) tsuA 1759949..1761007 (+) 1059 WP_000492330.1 thiosulfate utilization transporter TsuA/YeeE -
  VZW04_RS08385 (VZW04_08385) tsuB 1761021..1761248 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  VZW04_RS08390 (VZW04_08390) sbcB 1761291..1762718 (-) 1428 WP_000980600.1 exodeoxyribonuclease I Machinery gene
  VZW04_RS08395 (VZW04_08395) dacD 1762927..1764093 (+) 1167 WP_126851325.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  VZW04_RS08400 (VZW04_08400) sbmC 1764212..1764685 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  VZW04_RS08405 (VZW04_08405) yeeA 1764883..1765941 (+) 1059 WP_001200895.1 FUSC family protein -
  VZW04_RS08410 (VZW04_08410) tmaR 1766113..1766442 (+) 330 WP_000450409.1 DUF496 family protein -
  VZW04_RS08415 (VZW04_08415) - 1766543..1766725 (-) 183 WP_024174802.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54416.65 Da        Isoelectric Point: 5.2420

>NTDB_id=843229 VZW04_RS08390 WP_000980600.1 1761291..1762718(-) (sbcB) [Escherichia coli strain EC190486]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLYSGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=843229 VZW04_RS08390 WP_000980600.1 1761291..1762718(-) (sbcB) [Escherichia coli strain EC190486]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAGAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAGTGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAAGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579