Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   VZW04_RS01910 Genome accession   NZ_CP143092
Coordinates   418232..418909 (-) Length   225 a.a.
NCBI ID   WP_000178155.1    Uniprot ID   -
Organism   Escherichia coli strain EC190486     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 413232..423909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VZW04_RS01895 (VZW04_01895) chiA 414599..417292 (+) 2694 WP_024250449.1 bifunctional chitinase/lysozyme -
  VZW04_RS01900 (VZW04_01900) bfd 417461..417655 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  VZW04_RS01905 (VZW04_01905) bfr 417727..418203 (+) 477 WP_000675504.1 bacterioferritin -
  VZW04_RS01910 (VZW04_01910) pilD 418232..418909 (-) 678 WP_000178155.1 prepilin peptidase GspO Machinery gene
  VZW04_RS01915 (VZW04_01915) gspM 418909..419370 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  VZW04_RS01920 (VZW04_01920) gspL 419367..420530 (-) 1164 WP_001115235.1 type II secretion system protein GspL -
  VZW04_RS01925 (VZW04_01925) gspK 420545..421528 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  VZW04_RS01930 (VZW04_01930) gspJ 421521..422108 (-) 588 WP_126851294.1 type II secretion system minor pseudopilin GspJ -
  VZW04_RS01935 (VZW04_01935) gspI 422101..422478 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  VZW04_RS01940 (VZW04_01940) gspH 422475..422984 (-) 510 WP_001076044.1 type II secretion system minor pseudopilin GspH -
  VZW04_RS01945 (VZW04_01945) gspG 422992..423429 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24879.74 Da        Isoelectric Point: 7.6578

>NTDB_id=843205 VZW04_RS01910 WP_000178155.1 418232..418909(-) (pilD) [Escherichia coli strain EC190486]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFHQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=843205 VZW04_RS01910 WP_000178155.1 418232..418909(-) (pilD) [Escherichia coli strain EC190486]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCACCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378