Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VYI50_RS14605 Genome accession   NZ_CP142956
Coordinates   3059966..3060595 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain EC200461     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3054966..3065595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI50_RS14590 (VYI50_14590) helD 3055208..3057262 (-) 2055 WP_022645482.1 DNA helicase IV -
  VYI50_RS14595 (VYI50_14595) yccF 3057385..3057831 (+) 447 WP_001261235.1 YccF domain-containing protein -
  VYI50_RS14600 (VYI50_14600) yccS 3057841..3060003 (+) 2163 WP_000875041.1 YccS family putative transporter -
  VYI50_RS14605 (VYI50_14605) sxy/tfoX 3059966..3060595 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  VYI50_RS14610 (VYI50_14610) sulA 3060814..3061323 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  VYI50_RS14615 (VYI50_14615) ompA 3061680..3062720 (+) 1041 WP_022645481.1 porin OmpA -
  VYI50_RS14620 (VYI50_14620) matP 3062797..3063249 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  VYI50_RS14625 (VYI50_14625) ycbZ 3063435..3065195 (+) 1761 WP_000156473.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=843162 VYI50_RS14605 WP_000839153.1 3059966..3060595(-) (sxy/tfoX) [Escherichia coli strain EC200461]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=843162 VYI50_RS14605 WP_000839153.1 3059966..3060595(-) (sxy/tfoX) [Escherichia coli strain EC200461]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1