Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   VYI50_RS03990 Genome accession   NZ_CP142956
Coordinates   840970..842166 (-) Length   398 a.a.
NCBI ID   WP_199633341.1    Uniprot ID   -
Organism   Escherichia coli strain EC200461     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 835970..847166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI50_RS03980 (VYI50_03980) - 838244..839617 (+) 1374 WP_001546116.1 bifunctional cytidylyltransferase/SDR family oxidoreductase -
  VYI50_RS03985 (VYI50_03985) - 839634..840770 (+) 1137 WP_000115757.1 hypothetical protein -
  VYI50_RS03990 (VYI50_03990) kpsS 840970..842166 (-) 1197 WP_199633341.1 capsule biosynthesis protein Regulator
  VYI50_RS03995 (VYI50_03995) - 842201..844228 (-) 2028 WP_039052384.1 capsular polysaccharide biosynthesis protein -
  VYI50_RS04000 (VYI50_04000) kdsB 844225..844965 (-) 741 WP_000030748.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VYI50_RS04005 (VYI50_04005) - 844975..846651 (-) 1677 WP_001296395.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 47324.76 Da        Isoelectric Point: 10.1304

>NTDB_id=843129 VYI50_RS03990 WP_199633341.1 840970..842166(-) (kpsS) [Escherichia coli strain EC200461]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLTYYQTPKEFPGWLRALHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVIYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGGRCFTITL

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=843129 VYI50_RS03990 WP_199633341.1 840970..842166(-) (kpsS) [Escherichia coli strain EC200461]
ATGCAAGGCAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGACTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGCTCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCCTCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGCA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGTAATTATAACGATGTGCGTGACTATATTAATGAAGTCATATACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTTAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGTTTATTATGGGGGTAGATGTTTTACCATAACATTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.103

97.739

0.392