Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N024_RS07890 Genome accession   NZ_CP127246
Coordinates   1713399..1714115 (+) Length   238 a.a.
NCBI ID   WP_003317467.1    Uniprot ID   -
Organism   Pseudomonas syringae CC457     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1708399..1719115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N024_RS07870 (N024_07870) - 1708479..1709102 (+) 624 WP_024662229.1 glutathione S-transferase -
  N024_RS07875 (N024_07875) - 1709286..1710218 (+) 933 WP_024662230.1 ABC transporter ATP-binding protein -
  N024_RS07880 (N024_07880) - 1710215..1711003 (+) 789 WP_003421319.1 ABC transporter permease -
  N024_RS07885 (N024_07885) comA 1711140..1713356 (+) 2217 WP_024662231.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N024_RS07890 (N024_07890) exbB 1713399..1714115 (+) 717 WP_003317467.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N024_RS07895 (N024_07895) - 1714112..1714543 (+) 432 WP_003317468.1 biopolymer transporter ExbD -
  N024_RS07900 (N024_07900) lpxK 1714543..1715538 (+) 996 WP_024648606.1 tetraacyldisaccharide 4'-kinase -
  N024_RS07905 (N024_07905) - 1715556..1715741 (+) 186 WP_002552679.1 Trm112 family protein -
  N024_RS07910 (N024_07910) kdsB 1715738..1716502 (+) 765 WP_010405598.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N024_RS07915 (N024_07915) murB 1716537..1717556 (+) 1020 WP_024662232.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25804.35 Da        Isoelectric Point: 7.9113

>NTDB_id=843069 N024_RS07890 WP_003317467.1 1713399..1714115(+) (exbB) [Pseudomonas syringae CC457]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=843069 N024_RS07890 WP_003317467.1 1713399..1714115(+) (exbB) [Pseudomonas syringae CC457]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTGGACGGCGAAAAACTCAAGCAGCTGCGCGCTGAC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGTCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTG
GTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGTTCCGGGGCCACCGCCAATGCCGGCGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCGTCGGGTCTTATCGTCGCGATCCCGGCGATTTTCTTTCATCG
CTTCCTGCAGAGCCGCGTCGATGAGTTGGTGGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGATGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693