Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VYI52_RS15945 Genome accession   NZ_CP142949
Coordinates   3193191..3193820 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain EC190329     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3188191..3198820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI52_RS15930 (VYI52_15930) helD 3188433..3190487 (-) 2055 WP_020232990.1 DNA helicase IV -
  VYI52_RS15935 (VYI52_15935) yccF 3190610..3191056 (+) 447 WP_001261235.1 YccF domain-containing protein -
  VYI52_RS15940 (VYI52_15940) yccS 3191066..3193228 (+) 2163 WP_000875041.1 YccS family putative transporter -
  VYI52_RS15945 (VYI52_15945) sxy/tfoX 3193191..3193820 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  VYI52_RS15950 (VYI52_15950) sulA 3194039..3194548 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  VYI52_RS15955 (VYI52_15955) ompA 3194905..3195957 (+) 1053 WP_000750418.1 porin OmpA -
  VYI52_RS15960 (VYI52_15960) matP 3196032..3196484 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  VYI52_RS15965 (VYI52_15965) ycbZ 3196670..3198430 (+) 1761 WP_029701764.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=842992 VYI52_RS15945 WP_000839153.1 3193191..3193820(-) (sxy/tfoX) [Escherichia coli strain EC190329]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=842992 VYI52_RS15945 WP_000839153.1 3193191..3193820(-) (sxy/tfoX) [Escherichia coli strain EC190329]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1