Detailed information NTG0842846

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: QRX25_RS18135
• Genome accession: NZ_CP127224
• Coordinates: 3531330..3532475 (+)
• Length: 381 a.a.
• NCBI ID: WP_212099667.1
• Uniprot ID: -
• Organism: Bacillus sp. L381
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3526330..3537475

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QRX25_RS18115 (QRX25_18110)	argS	3526973..3528643 (-)	1671	WP_065982573.1	arginine--tRNA ligase	-
QRX25_RS18120 (QRX25_18115)	-	3528640..3529068 (-)	429	WP_212099662.1	DUF1934 domain-containing protein	-
QRX25_RS18125 (QRX25_18120)	-	3529221..3529700 (+)	480	Protein_3511	bacteriocin biosynthesis protein AlbG	-
QRX25_RS18130 (QRX25_18125)	-	3529706..3531100 (-)	1395	WP_212099664.1	YncE family protein	-
QRX25_RS18135 (QRX25_18130)	rapF	3531330..3532475 (+)	1146	WP_212099667.1	tetratricopeptide repeat protein	Regulator
QRX25_RS18140 (QRX25_18135)	-	3532459..3532578 (+)	120	WP_115996635.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
QRX25_RS18145 (QRX25_18140)	speB	3532712..3533584 (-)	873	WP_065522437.1	agmatinase	-
QRX25_RS18150 (QRX25_18145)	speE	3533643..3534473 (-)	831	WP_013353957.1	spermidine synthase	-
QRX25_RS18155 (QRX25_18150)	-	3534673..3536745 (+)	2073	WP_212099672.1	transglycosylase domain-containing protein	-
QRX25_RS18160 (QRX25_18155)	-	3536770..3537207 (-)	438	WP_212099675.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45726.04 Da
• Isoelectric Point: 5.0586

>NTDB_id=842846 QRX25_RS18135 WP_212099667.1 3531330..3532475(+) (rapF) [Bacillus sp. L381]
MASVVSSSAAGEKINEWYMYIRRFSIPDAEYLRREIKEELEHAEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVTDQIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKNGENYSIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELDQQPQLMGRTLFNIALCHNNQNNKDK
AIPHLKKAIDVFEKAQMIHSLPQPYFLLTQIYYKLENIDNAYDYHKKGVSICKEIDDIIYEEKFKFLEYLYTPNPRDILI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=842846 QRX25_RS18135 WP_212099667.1 3531330..3532475(+) (rapF) [Bacillus sp. L381]
GTGGCGAGTGTTGTATCGTCTTCAGCGGCTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGAGCATGCAGAGGATGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTGGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCGGAAAGCAAATTGACGTACG
TTACAGATCAGATAGAAAAAGCGGAATTTTACTTTAAGATGTCAGAAGTCTATTACTATATGAAACAAACTTATGTTTCA
ATGGACTATGCGCGGCAAGCTTATTTAATTTATAAAAATGGGGAGAATTATAGCATTAGGTTGACTCAGTGCCATTCTTT
GTTTGGCGCTAATTATCTTGATGTAAAGCAATATGATCATGCGATATCCCACTTTCAAAAAGCATATACGATGGCTGAAC
TGGATCAGCAGCCTCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGATAAA
GCTATTCCTCATTTAAAAAAAGCCATAGATGTTTTTGAAAAAGCTCAAATGATTCACTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTATAAGTTAGAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTGTCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAGAAATTTAAATTTTTGGAATATTTATACACGCCGAATCCAAGAGATATATTAATA
AATGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCTCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_8) (223-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	69.554	100	0.696
rapC	Bacillus subtilis subsp. subtilis str. 168	53.684	99.738	0.535