Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QMG87_RS19140 Genome accession   NZ_AP027170
Coordinates   3667042..3667557 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 20.1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3662042..3672557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG87_RS19115 (B201_3656) ygaZ 3662441..3663178 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  QMG87_RS19120 (B201_3657) ygaH 3663168..3663503 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  QMG87_RS19125 (B201_3658) emrR 3663594..3664124 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QMG87_RS19130 (B201_3659) emrA 3664251..3665423 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QMG87_RS19135 (B201_3660) emrB 3665440..3666978 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QMG87_RS19140 (B201_3661) luxS 3667042..3667557 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  QMG87_RS19145 (B201_3662) gshA 3667707..3669263 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  QMG87_RS19150 (B201_3663) yqaA 3669336..3669764 (-) 429 WP_001287457.1 YqaA family protein -
  QMG87_RS19155 (B201_3664) yqaB 3669761..3670327 (-) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QMG87_RS19185 (B201_3665) csrA 3671652..3671837 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=84283 QMG87_RS19140 WP_001130207.1 3667042..3667557(-) (luxS) [Escherichia coli strain 20.1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=84283 QMG87_RS19140 WP_001130207.1 3667042..3667557(-) (luxS) [Escherichia coli strain 20.1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment